Pos Variant Mutation Substitution Maplocus Category Phylotree17_haplogroups Phylotree17_clades HaploGrep2_weight RSRS_SNP KGP3_SNP AAC CodonPosition AminoAcid NewAminoAcid AminoAcid_pos_protein MutPred_Score mtDNA_Selection_Score CI_MitoTool OXPHOS_complex NuMTs_dayama Helix_count_hom Helix_count_het Helix_vaf_hom Helix_vaf_het Helix_haplogroups rCRS_Surr_seq LowComplexityRegion DuplSeq_rCRS DuplSeq_rCRS_pos 1719 A 1719A transition MT-RNR2 rRNA 279 27 4.4 0 1 7 10048 40 0.051269755 0.00020409934 I:4389,X:2650,N:1344,H:834,T:140,U:120,J:112,L3:85,B:78,M:64,D:56,L1:36,R:28,W:28,K:19,C:17,A:16,F:7,V:6,HV:5,L2:5,L0:4,G:3,P:1,Q:1 CCTTA[G/A]CCAAA 0 2706 A 2706A 3010 G 3010G 4216 C 4216C transition MT-ND1 Coding 502 14 5.5 0 1 Y304H 1 Y H 304 0.611 0.728164564 0.711538462 I 4 33421 129 0.1705301 0.0006582204 T:16763,J:15759,H:516,X:81,K:48,R:44,L1:28,M:26,L4:24,U:24,I:23,C:19,D:19,A:12,Z:7,F:6,HV:6,B:5,L2:5,E:2,G:1,L0:1,L3:1,P:1 TATGA[T/C]ATGTC 0 4491 A 4491A transition MT-ND2 Coding 74 7 6.7 0 1 V8I 1 V I 8 0.439 0.375774268 0.173076923 I 753 15 0.00384217 7.653725E-05 E:327,J:164,M:96,H:68,U:25,V:10,F:7,L2:7,L3:7,R:7,T:7,HV:5,W:5,K:4,A:3,B:3,D:3,I:2,L1:2,C:1 AACCC[G/A]TCATC 0 4820 A 4820A transition MT-ND2 Coding 102 7 6.7 0 1 11 3790 15 0.019338412 7.653725E-05 B:3497,H:106,U:54,X:41,T:16,J:13,M:12,N:12,R:7,A:6,L1:5,L2:5,HV:4,K:3,L3:3,C:2,D:2,I:1,W:1 CCAGA[G/A]GTTAC 0 4829 G 4829G transition MT-ND2 Coding 2 2 8.8 0 1 1 72 2 0.00036737882 1.0204967E-05 J:67,I:2,U:2,M:1 ACCCA[A/G]GGCAC 0 5237 A 5237A transition MT-ND2 Coding 13 8 6.5 0 0 2 740 38 0.0037758376 0.00019389438 J:250,K:196,H:84,L2:27,T:24,L1:23,U:23,B:22,D:16,M:15,A:14,C:11,I:9,R:6,F:5,HV:5,N:4,L3:2,X:2,L0:1,V:1 CCCCC[G/A]CTAAC 0 5496 G 5496G transition MT-ND2 Coding 1 M343V 1 M V 343 0.506 0.486229589 0.711538462 I 39 0 0.00019899686 0 H:31,C:5,X:3 CTTTT[A/G]TACTA 0 5633 T 5633T transition MT-TA tRNA 23 1 10 0 1 1 1123 1 0.005730089 5.1024836E-06 J:1123 TCAGC[C/T]ACTTT 0 6221 C 6221C transition MT-CO1 Coding 151 10 6.1 0 0 3 4298 30 0.021930473 0.0001530745 X:2775,L3:976,A:153,T:114,U:50,J:39,H:35,B:29,K:28,I:23,L2:22,G:12,R:10,M:8,W:7,HV:3,L1:3,C:2,D:2,F:2,V:2,L0:1,N:1,Q:1 TTACC[T/C]CCCTC 1 6261 A 6261A transition MT-CO1 Coding 26 10 6.1 0 1 A120T 1 A T 120 0.572 0.626737049 0.980769231 IV 1501 30 0.0076588276 0.0001530745 T:881,H:208,J:178,L3:51,X:27,U:26,N:22,C:16,M:14,V:14,B:13,HV:10,W:8,K:7,R:6,D:5,L2:4,I:3,L0:2,L1:2,A:1,E:1,F:1,Y:1 TGGAG[G/A]CCGGA 0 6371 T 6371T transition MT-CO1 Coding 89 1 10 0 1 11 2777 4 0.014169596 2.0409934E-05 X:2777 GTCTC[C/T]TCTAT 0 6620 C 6620C transition MT-CO1 Coding 47 18 5.1 0 0 3 743 13 0.003791145 6.6332286E-05 E:188,H:126,A:110,M:82,J:49,I:30,T:29,U:28,K:18,B:14,R:14,L1:10,L3:9,C:8,L2:8,D:6,HV:4,L4:4,F:1,G:1,V:1,W:1,X:1,Z:1 TTCGG[T/C]CACCC 0 7028 C 7028C 7476 T 7476T transition MT-TS1 tRNA 57 1 10 0 1 0 3012 12 0.01536868 6.12298E-05 J:3011,HV:1 CAAAG[C/T]TGGTT 0 8393 T 8393T transition MT-ATP8 Coding 21 2 8.8 0 1 P10S 1 P S 10 0.569 0.619547028 0.519230769 V 1380 3 0.007041427 1.530745E-05 X:1356,H:8,U:8,C:3,T:3,A:1,R:1 TATGG[C/T]CCACC 0 8592 A 8592A transition MT-ATP6 Coding 5 3 8.1 0 1 5 307 2 0.0015664625 1.0204967E-05 H:239,X:49,D:17,K:2 GTACT[G/A]ATCAT 0 9055 A 9055A transition MT-ATP6 Coding 224 12 5.8 0 1 A177T 1 A T 177 0.492 0.460740402 0.865384615 V 15776 62 0.08049678 0.00031635398 K:14789,U:362,H:257,J:94,A:92,HV:59,L3:26,B:25,M:17,T:12,X:10,D:7,N:7,I:5,R:5,L1:2,L2:2,V:2,C:1,F:1,W:1 GAAGC[G/A]CCACC 0 9468 G 9468G transition MT-CO3 Coding 8 3 8.1 0 1 T88A 1 T A 88 0.343 0.259759926 0.942307692 IV 1 191 8 0.0009745743 4.081987E-05 H:123,M:51,F:5,L3:3,X:3,N:2,D:1,I:1,R:1,U:1 TTATT[A/G]CCTCA 0 10172 A 10172A transition MT-ND3 Coding 29 7 6.7 0 1 5 1282 21 0.006541384 0.00010715215 J:1116,H:48,K:25,B:15,L3:13,T:9,D:8,U:8,A:6,L2:6,L1:5,M:5,V:5,C:2,I:2,P:2,R:2,F:1,G:1,HV:1,L0:1,X:1 TACGA[G/A]TGCGG 0 10394 T 10394T transition MT-ND3 Coding 8 1 10 0 1 3 754 2 0.0038472724 1.0204967E-05 H:752,D:1,L3:1 TTAGA[C/T]TGAAC 0 10398 G 10398G transition MT-ND3 Coding 2516 20 4.9 1 1 T114A 1 T A 114 0.17 0.133536283 0.365384615 I 5 49322 289 0.2516647 0.0014746177 J:15207,K:11632,I:4351,M:3194,L3:3033,C:2970,L2:2504,D:2165,L1:1618,B:464,N:412,L0:409,E:321,G:287,W:137,Y:132,T:122,Z:98,L4:77,H:47,R:45,U:38,A:31,Q:11,L5:7,V:4,HV:3,L6:1,P:1,X:1 ACTGA[A/G]CCGAA 0 11084 G 11084G transition MT-ND4 Coding 26 9 6.3 0 1 T109A 1 T A 109 0.482 0.443356074 1 I 12 471 2 0.0024032698 1.0204967E-05 M:138,H:128,J:71,K:31,U:23,A:21,C:13,V:13,X:7,W:6,B:5,D:5,T:5,F:1,HV:1,L2:1,L4:1,N:1 TTATA[A/G]CATTC 0 11251 G 11251G transition MT-ND4 Coding 471 1 10 0 1 32774 48 0.16722879 0.0002449192 T:16894,J:15879,A:1 GCACT[A/G]ATTTA 0 11719 G 11719G 11908 G 11908G transition MT-ND4 Coding 3 3 8.1 0 1 2 81 4 0.00041330117 2.0409934E-05 H:31,U:17,M:9,L3:5,HV:3,J:3,T:3,A:2,X:2,B:1,D:1,F:1,L2:1,V:1,W:1 CTAGT[A/G]ACCAC 0 12612 G 12612G transition MT-ND5 Coding 250 8 6.5 0 1 2 15880 182 0.08102743 0.00092865195 J:15549,K:84,N:64,U:58,H:46,L2:26,T:16,M:10,F:9,X:5,L1:3,R:3,C:2,HV:2,A:1,L3:1,L4:1 CCTGT[A/G]GCATT 0 12705 T 12705T transition MT-ND5 Coding 2481 1 10 1 1 12 35323 91 0.18023501 0.00046432597 A:6125,I:4351,M:3286,W:3217,L3:3070,C:3053,X:2758,L2:2512,D:2245,N:1677,L1:1651,L0:413,E:330,G:297,Y:132,Z:101,L4:79,Q:11,L5:7,H:4,V:2,L6:1,S:1 CTCAT[C/T]TTCCT 1 13708 G 13708G 14470 C 14470C transition MT-ND6 Coding 128 15 5.4 0 0 3 3739 36 0.019078186 0.00018368941 X:2778,J:224,H:179,M:119,A:114,U:108,D:64,B:56,K:30,HV:13,T:10,R:8,L1:7,C:5,W:5,N:4,G:3,L2:3,V:3,I:2,L0:2,L3:1,L4:1 GTATA[T/C]CCAAA 0 14766 C 14766C 14798 C 14798C transition MT-CYB Coding 328 5 7.3 0 1 F18L 1 F L 18 0.609 0.722584787 0.538461538 III 5 25882 35 0.13206248 0.00017858692 K:14774,J:10551,T:251,H:104,U:60,W:35,V:16,L1:15,A:13,M:12,B:9,HV:8,I:7,X:7,L3:6,Q:6,D:5,F:1,N:1,R:1 ACTCA[T/C]TCATC 0 15257 A 15257A transition MT-CYB Coding 69 3 8.1 0 1 D171N 1 D N 171 0.785 1.421912168 0.961538462 III 3511 17 0.017914819 8.674222E-05 J:3022,K:404,U:50,T:11,M:10,H:7,A:2,B:2,I:1,L2:1,R:1 CAGTA[G/A]ACAGT 0 15323 A 15323A transition MT-CYB Coding 25 4 7.6 0 1 A193T 1 A T 193 0.517 0.507242205 0.5 III 5 580 19 0.0029594405 9.694719E-05 H:336,G:77,A:48,T:27,B:20,K:19,I:15,U:12,HV:5,J:4,L2:4,M:4,C:2,R:2,D:1,L1:1,L3:1,V:1,X:1 CCCTA[G/A]CAACA 0 15340 G 15340G transition MT-CYB Coding 1 1 10 0 1 167 1 0.0008521147 5.1024836E-06 H:117,U:26,HV:14,K:5,F:2,L1:2,L3:1 CTCCT[A/G]TTCTT 0 15367 T 15367T transition MT-CYB Coding 5 2 8.8 0 1 2 628 1 0.0032043597 5.1024836E-06 J:596,H:9,U:9,L2:8,V:4,L3:1,T:1 AACAA[C/T]CCCCT 0 15452 A 15452A transversion MT-CYB Coding 471 1 10 0 1 L236I 1 L I 236 0.098 0.101235567 0.711538462 III 32944 13 0.16809621 6.6332286E-05 T:16972,J:15972 TCTTC[C/A]TTCTC 0 15466 A 15466A transition MT-CYB Coding 100 8 6.5 0 1 3 248 12 0.0012654159 6.12298E-05 H:116,L0:22,U:22,X:21,K:18,J:8,L3:8,R:8,A:6,B:5,M:3,T:3,W:3,N:2,D:1,HV:1,L2:1 TTAAT[G/A]ACATT 0 15553 A 15553A transition MT-CYB Coding 12 5 7.3 0 1 5 313 15 0.0015970774 7.653725E-05 H:159,U:48,L1:29,J:22,T:17,A:7,R:7,I:6,M:6,K:4,B:2,C:2,L3:2,E:1,N:1 ATCAA[G/A]CCCGA 0 15812 A 15812A transition MT-CYB Coding 28 3 8.1 0 1 V356M 1 V M 356 0.518 0.509196893 0.326923077 III 1 1389 24 0.0070873494 0.0001224596 J:1120,L3:204,W:16,H:15,U:12,T:7,K:5,L1:5,F:2,I:1,L2:1,X:1 CATCC[G/A]TACTA 0 15927 A 15927A transition MT-TT tRNA 58 7 6.7 0 1 2 1803 35 0.009199778 0.00017858692 X:1344,B:208,H:85,HV:60,M:23,U:18,K:17,A:14,L2:7,J:6,G:5,L3:4,R:4,D:2,V:2,C:1,F:1,L1:1,W:1 AAACC[G/A]GAGAT 0