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Baseline OPTIMUM scans were processed using the HCP-ABCD pipeline. Freesurfer outputs from this were used to extract anatomical statistics. Functional scans were also processed via the ABCD pipeline, followed by denoising with XCP. The denoised outputs (TSVs) used Schaefer-156 parcellation and were processed into ROI-to-ROI and network-level connectivity matrices. Diffusion scans were preprocessed with QSIPREP, and tractography was performed using probabilistic methods.
All code used for the processing pipeline will be committed to the BAARD github repository. For more information or detailed breakdown of the processing pipeline please e-mail Hassan.Abdulrasul@camh.ca
Path to outputs
Modality | Path |
Structural (T1w) | /external/rprshnas01/netdata_kcni/dflab/data/BAARD/mri/smri |
Functional (rs-fMRI) | /external/rprshnas01/netdata_kcni/dflab/data/BAARD/mri/fmri |
Diffusion (DWI) | /external/rprshnas01/netdata_kcni/dflab/data/BAARD/mri/dwi |
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