genotype/
Description: Genomic variant data.
- readme.txt: Details on preprocessing and analysis.
Subfolders:
raw/: Original genotype data (in VCF file format).
processed/: Filtered genotype data.
raw/ OPTIMUM
OPTIMUM_CT_TOPMed_R3_chr1.vcf
OPTIMUMOPTIMUM_CT_TOPMed_R3_chr1.nosex
OPTIMUM_CT_TOPMed_R3_chr2.
vcfvcf OPTIMUM_CT_TOPMed_R3_chr2.nosex
OPTIMUM_CT_TOPMed_R3_
chr10.vcfchr3.vcf OPTIMUM_CT_TOPMed_R3_chr3.nosex
OPTIMUM_CT_TOPMed_R3
_chr10_chr4.vcf OPTIMUM_CT_TOPMed_R3_chr4.nosex
OPTIMUM_CT_TOPMed_R3_
chr3.vcf OPTIMUMchr5.vcf OPTIMUM_CT_TOPMed_R3_
chr3chr5.nosex
OPTIMUM_CT_TOPMed_R3_
chr18.vcf OPTIMUMchr6.vcf OPTIMUM_CT_TOPMed_R3_
chr18chr6.nosex
OPTIMUM_CT_TOPMed_R3_
chr11.vcf OPTIMUMchr7.vcf OPTIMUM_CT_TOPMed_R3_
chr11chr7.nosex
OPTIMUM_CT_TOPMed_R3_
chr4.vcf OPTIMUMchr8.vcf OPTIMUM_CT_TOPMed_R3_
chr4chr8.nosex
OPTIMUM_CT_TOPMed_R3_
chr19chr9.
vcfvcf OPTIMUM_CT_TOPMed_R3_
chr19chr9.nosex
OPTIMUM_CT_TOPMed_R3_
chr12chr10.
vcf OPTIMUMvcf OPTIMUM_CT_TOPMed_R3_
chr12chr10.nosex
OPTIMUM_CT_TOPMed_R3_
chr5chr11.
vcfvcf OPTIMUM_CT_TOPMed_R3_
chr5chr11.nosex
OPTIMUM_CT_TOPMed_R3_
chr6chr12.vcf OPTIMUM_CT_TOPMed_R3_chr12.nosex
OPTIMUM_CT_TOPMed_R3_chr13.
vcfvcf OPTIMUM_CT_TOPMed_R3_
chr20chr13.nosex
OPTIMUM_CT_TOPMed_R3_
chr6chr14.
vcfvcf OPTIMUM_CT_TOPMed_R3_chr14.nosex
OPTIMUM_CT_TOPMed_R3_
chr20chr15.
vcfvcf OPTIMUM_CT_TOPMed_R3_
chr7chr15.nosex
OPTIMUM_CT_TOPMed_R3_
chr14chr16.vcf
OPTIMUM_CT_TOPMed_R3_
chr21chr16.nosex
OPTIMUM_CT_TOPMed_R3_
chr7chr17.vcf
OPTIMUMOPTIMUM_CT_TOPMed_R3_chr17.nosex
OPTIMUM_CT_TOPMed_R3_
chr13chr18.
nosexvcf OPTIMUM_CT_TOPMed_R3_
chr15chr18.nosex
OPTIMUM_CT_TOPMed_R3_
chr21chr19.vcf
OPTIMUM_CT_TOPMed_R3_
chr8chr19.nosex
OPTIMUM_CT_TOPMed_R3_
chr15chr20.vcf
OPTIMUM_CT_TOPMed_R3_
chr22chr20.nosex
OPTIMUM_CT_TOPMed_R3_
chr8chr21.vcf
OPTIMUM_CT_TOPMed_R3_
chr16chr21.nosex
OPTIMUM_CT_TOPMed_R3_chr22.vcf
OPTIMUM_CT_TOPMed_R3_chr9.nosex
OPTIMUM_CT_TOPMed_R3_chr16.vcf
OPTIMUM_CT_TOPMed_R3_chr17.vcf
OPTIMUM_CT_TOPMed_R3_chr9.vcf
OPTIMUM_CT_TOPMed_R3_chr17.nosexOPTIMUM_CT_TOPMed_R3_chr22.nosex
raw/ IRLGREY
IRL-Grey_TOPMed_R3_chr1.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr1.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr2.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr2.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr3.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr3.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr4.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr4.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr5.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr5.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr6.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr6.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr7.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr7.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr8.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr8.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr9.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr9.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr10.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr10.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr11.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr11.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr12.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr12.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr13.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr13.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr14.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr14.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr15.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr15.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr16.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr16.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr17.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr17.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr18.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr18.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr19.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr19.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr20.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr20.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr21.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr21.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr22.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr22.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi