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genotype/

Description: Genomic variant data.

  • readme.txt: Details on preprocessing and analysis. 

  • Subfolders:

    • raw/: Original genotype data (in VCF file format).

    • processed/: Filtered genotype data.



raw/ OPTIMUM

OPTIMUM_CT_TOPMed_R3_chr1.vcf   OPTIMUM_CT_TOPMed_R3_chr1.nosex

OPTIMUM_CT_TOPMed_R3_chr2.vcf   OPTIMUM_CT_TOPMed_R3_chr2.nosex

OPTIMUM_CT_TOPMed_R3_chr3.vcf   OPTIMUM_CT_TOPMed_R3_chr3.nosex

OPTIMUM_CT_TOPMed_R3_chr4.vcf   OPTIMUM_CT_TOPMed_R3_chr4.nosex

OPTIMUM_CT_TOPMed_R3_chr5.vcf   OPTIMUM_CT_TOPMed_R3_chr5.nosex

OPTIMUM_CT_TOPMed_R3_chr6.vcf   OPTIMUM_CT_TOPMed_R3_chr6.nosex

OPTIMUM_CT_TOPMed_R3_chr7.vcf   OPTIMUM_CT_TOPMed_R3_chr7.nosex

OPTIMUM_CT_TOPMed_R3_chr8.vcf   OPTIMUM_CT_TOPMed_R3_chr8.nosex

OPTIMUM_CT_TOPMed_R3_chr9.vcf   OPTIMUM_CT_TOPMed_R3_chr9.nosex

OPTIMUM_CT_TOPMed_R3_chr10.vcf  OPTIMUM_CT_TOPMed_R3_chr10.nosex

OPTIMUM_CT_TOPMed_R3_chr11.vcf  OPTIMUM_CT_TOPMed_R3_chr11.nosex

OPTIMUM_CT_TOPMed_R3_chr12.vcf  OPTIMUM_CT_TOPMed_R3_chr12.nosex

OPTIMUM_CT_TOPMed_R3_chr13.vcf  OPTIMUM_CT_TOPMed_R3_chr13.nosex

OPTIMUM_CT_TOPMed_R3_chr14.vcf  OPTIMUM_CT_TOPMed_R3_chr14.nosex

OPTIMUM_CT_TOPMed_R3_chr15.vcf  OPTIMUM_CT_TOPMed_R3_chr15.nosex

OPTIMUM_CT_TOPMed_R3_chr16.vcf OPTIMUM_CT_TOPMed_R3_chr16.nosex

OPTIMUM_CT_TOPMed_R3_chr17.vcf OPTIMUM_CT_TOPMed_R3_chr17.nosex 

OPTIMUM_CT_TOPMed_R3_chr18.vcf OPTIMUM_CT_TOPMed_R3_chr18.nosex

OPTIMUM_CT_TOPMed_R3_chr19.vcf OPTIMUM_CT_TOPMed_R3_chr19.nosex

OPTIMUM_CT_TOPMed_R3_chr20.vcf OPTIMUM_CT_TOPMed_R3_chr20.nosex

OPTIMUM_CT_TOPMed_R3_chr21.vcf OPTIMUM_CT_TOPMed_R3_chr21.nosex

OPTIMUM_CT_TOPMed_R3_chr22.vcf OPTIMUM_CT_TOPMed_R3_chr22.nosex

raw/ IRLGREY

IRL-Grey_TOPMed_R3_

chr10

chr1.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr10

chr1.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr11

chr2.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr11

chr2.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr12

chr3.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr12

chr3.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr13

chr4.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr13

chr4.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr14

chr5.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr14

chr5.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr15

chr6.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr15

chr6.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr16

chr7.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr16

chr7.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr17

chr8.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr17

chr8.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr18

chr9.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr18

chr9.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr19

chr10.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr19

chr10.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr1

chr11.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr1

chr11.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

 IRL-Grey_TOPMed_R3_

chr20

chr12.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr20

chr12.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr21

chr13.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr21

chr13.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr22

chr14.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr22

chr14.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr2

chr15.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr2

chr15.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr3

chr16.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr3

chr16.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr4

chr17.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr4

chr17.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr5

chr18.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr5

chr18.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr6

chr19.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr6

chr19.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr7

chr20.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr7

chr20.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr8

chr21.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr8

chr21.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi

IRL-Grey_TOPMed_R3_

chr9

chr22.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz

IRL-Grey_TOPMed_R3_

chr9

chr22.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi