The Krembil Centre for Neuroinformatics at CAMH || Looking for more? Email us at krembil.centre@camh.ca

Skip to end of metadata
Go to start of metadata

Krembil Centre for Neuroinformatics Summer School

Solving Problems in Mental Health using Multi-Scale Computational Neuroscience

JULY 5-9th, 12-14th, 2021.

Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health


Please register at: https://www.crowdcast.io/e/kcni-summer-school-2021

Day 1: Welcome! Understanding Clinical Research Questions and Reproducible Science (July 5, 2021)

Instructors: Erin Dickie, Sean Hill, Sejal Patel, Victor Tang, Brett Jones
TA's: Kevin Kadak, Taha Morshedzadeh, Kevin Witczak
Time (EST)
Session

9:00-10:30
Lecture 1: Welcome and Orientation
Watch on Crowdcast
10:45-12:15
Lecture 2:  Problems and opportunities in the diagnosis and treatment of major depression
Watch on Crowdcast
1:00-2:30pm
Workshop 1: Guiding principles for FAIR and open science
Watch on Crowdcast
2:45-4:15pm
Workshop 2: Tools for Reproducible Science
Watch on Crowdcast

Day 2: Applied Ethics in Machine Learning and Mental Health (July 6, 2021)

Instructors: Daniel Buchman, Marta Maslej & Laura Sikstrom
Time (EST)
Session

9:00-10:30
Lecture 1: Introduction to AI Ethics
Watch on Crowdcast
10:45-12:15
Lecture 2:  Fairness and Health Equity
Watch on Crowdcast
1:00-2:30pm
Workshop 1: Research Design, Data Collection, Model Construction and Validation
Watch on Crowdcast
2:45-4:15pm
Workshop 2: Analysis, Interpretation and Knowledge Exchange and/or Translation
Watch on Crowdcast

Day 3: Fundamental Methods for Genomic and Single-Cell Transcriptome Analysis (July 7, 2021)

Instructors:  Shreejoy Tripathy & Dan Felsky
TA's:  Keon Arbabi, Sonny Chen, Micaela Consens, Amin Kharaghani
Time (EST)
Session

9:00-10:30
Lecture 1: Basics of genotype, central dogma, GWAS, and polygenic risk scores
Watch on Crowdcast
10:45-12:15
Lecture 2:  Transcriptomics at the single-cell and bulk level level
Watch on Crowdcast
1:00-2:30pm
Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq
Watch on Crowdcast
2:45-4:15pm
Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data
Watch on Crowdcast

Day 4: Simulating Brain Microcircuit Activity and Signals in Mental Health (July 8, 2021)

Instructors: Etay Hay & Frank Mazza
Time (EST)
Session

9:00-10:30
Lecture 1: Simulating brain microcircuit activity in mental health
Watch on Crowdcast
10:45-12:15
Lecture 2: Simulating EEG from brain microcircuits in mental health
Watch on Crowdcast
1:00-2:30pm
Workshop 1: Simulating and analyzing spiking from neurons and microcircuits
Watch on Crowdcast
2:45-4:15pm
Workshop 2: Simulating and analyzing EEG signals from brain microcircuits
Watch on Crowdcast

Day 5: Whole-Brain Modelling and Neuroimaging Connectomics (July 9, 2021)

Instructors: Erin Dickie & John Griffiths
TA's: Shreyas Harita, Jerrold Jeyachandra, Kevin Kadak
Time (EST)
Session

9:00-10:30
Lecture 1: Introduction to neuroimaging connectomics
Watch on Crowdcast
10:45-12:15
Workshop 1: Calculating Neuroimaging Connectomes
Watch on Crowdcast
1:00-2:30pm
Lecture 2: Intro to whole-brain modelling (Lecture)
Watch on Crowdcast
2:45-4:15pm
Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation
Watch on Crowdcast

Day 6: Bayesian Models of Learning and Integration of Neuroimaging Data (July 12, 2021)

Instructors: Andreea Diaconescu
TA's: Colleen Charlton, Daniel Hauke, Peter Bedford, Povilas Karvelis
Time (EST)
Session

9:00-10:30
Lecture 1: Bayesian Models of Learning
Watch on Crowdcast
10:45-12:15
Turorial 1:  Hierarchical Gaussian Filter and Simulating Learners
Watch on Crowdcast
1:00-2:30pm
Lecture 2: Computational Modelling of EEG Data
Watch on Crowdcast
2:45-4:15pm
Tutorial 2: Single-trial EEG Modelling
Watch on Crowdcast

Day 7: Digital Health and Population-Based Data Resources (July 13, 2021)

Instructors: Daniel Felsky, Abhi Pratap & Joanna Yu
TA's: Mohamed Abdelhack, Grace Jacobs, Amin Kharaghani, Marta Maslej, Milos Milic, Earvin Tio


Time (EST)
Session

9:00-10:30
Lecture 1: Digital Health for Mental health
Watch on Crowdcast
10:45-12:15
Lecture 2: Population-based resources and the BrainHealth Databank
Watch on Crowdcast
1:00-2:30pm
Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflow
Watch on Crowdcast
2:45-4:15pm
Workshop 2: Introduction to interactive methods
Watch on Crowdcast

Day 8:  Integrative Research Methods and Final Panel Discussion (July 14, 2021)

Instructors: Daniel Felsky & Abhi Pratap + All Instructor Panel
TA's: Mohamed Abdelhack, Amin Kharaghani, Marta Maslej, Milos Milic, Earvin Tio
Time (EST)
Session

9:00-10:30
Lecture 1: Types of integrative research and Whole Person Modelling
Watch on Crowdcast
10:45-12:15
Workshop: SNF / Subtyping
Watch on Crowdcast
1:00-2:30pm
Group Panel Discussion
Watch on Crowdcast
2:45-4:15pm
Final Social Hour
Watch on Crowdcast
2020 Summer School Overview
  • No labels