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changes.mady.by.user Hassan Abdulrasul

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changes.mady.by.user Amber Fedynak

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Dashboard Code Repository

An interactive dashboard used to support decision making in the development and evaluation of the BAARD tool.

🔗 https://github.com/BAARD-CAMH/dashboard

Data Analysis Code Repository

All scripts and code utilized in the processing, harmonization, and analysis of multi-modal datasets for the BAARD project.

🔗 https://github.com/BAARD-CAMH/data-analysis

Data Modelling Code Repository

This repository contains scripts for implementing a variety of modelling approaches for the BAARD project.

🔗 https://github.com/BAARD-CAMH/modelling


The Collated Dataset of MRI and other variables:


BAARD_dashboard_230525.html

BAARD Data Wrangling Issues

BAARD Data Wrangling Issues

Variables incorporated:

  • Demographics
  • Clinical scales 
    • MADRS 
    • PHQ9
  • Medication 
    • Start of dose date
    • Adherence 
    • Assignment
  • Remission status
  • Neurocognitive index scores
  • NIH Toolbox
  • Falls
  • Blood
  • Neuroimaging
    • sMRI; Cortical thickness and subcortical volumes 
    • fMRI; Between network and within network connectivity 
    • DWI; probabilistic FA values roi level

Variables remaining:

  • Termination forms
  • Side effects
  • Compare with UBC
  • Psych meds
  • ATHF


The Collated Dataset for Clinical Variables

located on SCC, path,

Note: All clinical data processed and collated by Amber Fedynak.

Path:  /external/rprshnas01/netdata_kcni/dflab/data/BAARD/clinical_master_sheet_v1.0.csv

variables

Variables incorporated

into 

into clinical_master_sheet_v1.0.csv

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    DatasetKey Variables ExtractedNotes
    MADRS
    • Date of assessment
    • MADRS score at baseline and Week 10

    Used for primary outcome measurement

    of depression severity

    PHQ-9
    • Date of assessment
    • PHQ-9 score at baseline and biweekly intervals
    		Supports secondary outcome tracking
    Core Variables
    • Age
    • Weight
    • BMI
    • Education level
    • Gender
    		Demographics and clinical covariates
    Randomized GroupsRandomization group assignment (e.g., augmentation vs. switch)

    Used to stratify participants in modeling

    and analyses

    Medication
    • Aripiprazole augmentation
    • Bupropion augmentation
    • Bupriopion Wwitch

    Parsed by group including adherence

    variables



    files "in progress" for incorporation into clinical_master_sheet_v1.0.csv

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