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The CAMH Scientific Computing Workshop Series

Our research is increasingly more computationally-driven and training is often not part of the core curriculum for biomedical / medical science degrees.

The Scientific Computing Workshops at CAMH are focused on building computing skills and fundamentals to help organize study data, automate repeatable/reproducible analyses, and make use of CAMH computing resources to save time.

The workshops offer a range of topics and support different levels of experience.

We use a shared dataset - spanning demographic, cognitive, imaging, and genomic data - across all workshops, maintaining consistency across the series.

Given the current COVID-19 global pandemic, SCWG workshop instructors are posting workshop materials and relevant learning resources to this site to aid those learning from home.

If you have questions, send us an email at SCWG@camh.ca


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Anchor
Current Workshops
Current Workshops

Current

Workshop

Schedule (

Recordings from Fall 2022

)WorkshopDateRegister

series

  • Introduction to Linux/Bash

November 28th, 1:00-2:00 

HereIntroduction to PythonNovember 28th, 10:00-12:00 Here
  • Intermediate Python
November 29th, 3:00-5:00 Here

Introduction to Git and GitLab (Parts 1-2)*

Part 1: December 1st, 2:00-3:00 
Part 2: December 1st, 3:00-4:00 

Part 1: Here
Part 2: Here

  • Introduction to R (Parts 1-3)
*Part 1: November 29th, 10:00-11:00
Part 2: November 29th, 11:00-12:00
Part 3: November 29th, 12:00-1:00 Part 1: Here
Part 2: Here
Part 3: Here
  • Introduction to SQL
December 1st, 10:00-11:00 Here
  • Introduction to Tableau
December 1st, 1:00-2:00 Here
  • Introduction to MRI with BIDS
November 30th, 11:00-1:00 Here
  • Introduction to dMRI
December 1st, 11:00-1:00 Here
  • GWAS Quality Control
November 29th, 1:00-3:00 Here
  • Polygenic Risk Score Analysis
November 30th, 1:00-3:00 Here
  • Good practices for working with data in Excel
November 28th, 12:00-1:00 
Here
  • Replication & Reproducible Research
November 28th, 2:00-3:00 Here
  • Reproducible Research in SPSS
November 30th, 10:00-11:00 Here
  • Functional Neuroimaging Analysis
December 2nd, 11:00-1:00 
Here
  • Working with MNE and EEG-BIDS
December 2nd, 2:00-4:00 Here*If attending all parts of these workshops, you only need to register once, as the same meeting link will be used for the entire duration of the course

Workshop recordings from April 2022 series

Includes:

  • Introduction to Linux/Bash
  • Introduction to Python
  • Intermediate Python
  • Introduction to Git and GitLab
  • R Workshop Series - Week 1: R & RStudio Overview
  • SPSS Workshop Series - Week 1: Intro to SPSS
  • GWAS Quality Control
  • Replication & Reproducible Research
  • Polygenic Risk Score Analysis
  • Introduction to SQL
  • Introduction to Tableau


Workshop recordings from Nov 2021 series

Includes:

  • Building a Relational Database in Microsoft Access
  • Introduction to Linux/Bash
  • Introduction to Python
  • Introduction to Git and GitLab
  • Advanced Excel: Reproducible Data Wrangling
  • SPSS Workshop Series - Workshop 7 - Introduction to Linear Regression
  • GWAS Quality Control
  • Case Study: Using REDCap API to clean COVID vaccine data
  • R Workshop Series - Workshop 7 - Introduction to Linear Regression
  • Polygenic Risk Score Analysis
  • Introduction to SQL
  • Introduction to Tableau