Rstudio Server

Access rstudio server https://rstudio.camh.ca/

           We recommand using chrome browser, using your SCC account to log in 

Submit job to slurm

press Alt+Shift+R or click Tools → Terminal → New Terminal

type

sbatch your_scripts

Run job from the command line

sbatch -J myjob --mem=64G -t 24:00:00 -o myjob.slurm.log --wrap="Rscript myscript.R"

Sample job scripts

1. suppose your R script name is test.R

          edit a file named myR.slurm with the following content:         

#!/bin/bash -l
#SBATCH --job-name=serial_job_test    # Job name
#SBATCH --mail-type=END,FAIL          # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=email@camh.ca     # Where to send mail     
#SBATCH --ntasks=1                    # Run on a single CPU
#SBATCH --mem=128gb                     # Job memory request
#SBATCH --time=24:00:00               # Time limit hrs:min:sec
#SBATCH --output=serial_test_%j.log   # Standard output and error log
pwd; hostname; date

module load lang/R/4.0.3-Python-3.8.5-Anaconda3-2020.11

Rscripts test.R

Then on the terminal run the following:

sbatch myR.slurm

Related articles

• Page:
  Contact Administrator
• Page:
  Running Jobs on SCC Clusters
• Page:
  User Policy
• Page:
  Modules and Environment Variables
• Page:
  Available Modules List on SCC