genotype/
Description: Genomic variant data.
- readme.txt: Details on preprocessing and analysis.
Subfolders:
raw/: Original genotype data (in VCF file format).
processed/: Filtered genotype data.
raw/ OPTIMUM
OPTIMUM_CT_TOPMed_R3_chr1.vcf OPTIMUM_CT_TOPMed_R3_chr1.nosex
OPTIMUM_CT_TOPMed_R3_chr2.vcf OPTIMUM_CT_TOPMed_R3_chr2.nosex
OPTIMUM_CT_TOPMed_R3_chr3.vcf OPTIMUM_CT_TOPMed_R3_chr3.nosex
OPTIMUM_CT_TOPMed_R3_chr4.vcf OPTIMUM_CT_TOPMed_R3_chr4.nosex
OPTIMUM_CT_TOPMed_R3_chr5.vcf OPTIMUM_CT_TOPMed_R3_chr5.nosex
OPTIMUM_CT_TOPMed_R3_chr6.vcf OPTIMUM_CT_TOPMed_R3_chr6.nosex
OPTIMUM_CT_TOPMed_R3_chr7.vcf OPTIMUM_CT_TOPMed_R3_chr7.nosex
OPTIMUM_CT_TOPMed_R3_chr8.vcf OPTIMUM_CT_TOPMed_R3_chr8.nosex
OPTIMUM_CT_TOPMed_R3_chr9.vcf OPTIMUM_CT_TOPMed_R3_chr9.nosex
OPTIMUM_CT_TOPMed_R3_chr10.vcf OPTIMUM_CT_TOPMed_R3_chr10.nosex
OPTIMUM_CT_TOPMed_R3_chr11.vcf OPTIMUM_CT_TOPMed_R3_chr11.nosex
OPTIMUM_CT_TOPMed_R3_chr12.vcf OPTIMUM_CT_TOPMed_R3_chr12.nosex
OPTIMUM_CT_TOPMed_R3_chr13.vcf OPTIMUM_CT_TOPMed_R3_chr13.nosex
OPTIMUM_CT_TOPMed_R3_chr14.vcf OPTIMUM_CT_TOPMed_R3_chr14.nosex
OPTIMUM_CT_TOPMed_R3_chr15.vcf OPTIMUM_CT_TOPMed_R3_chr15.nosex
OPTIMUM_CT_TOPMed_R3_chr16.vcf OPTIMUM_CT_TOPMed_R3_chr16.nosex
OPTIMUM_CT_TOPMed_R3_chr17.vcf OPTIMUM_CT_TOPMed_R3_chr17.nosex
OPTIMUM_CT_TOPMed_R3_chr18.vcf OPTIMUM_CT_TOPMed_R3_chr18.nosex
OPTIMUM_CT_TOPMed_R3_chr19.vcf OPTIMUM_CT_TOPMed_R3_chr19.nosex
OPTIMUM_CT_TOPMed_R3_chr20.vcf OPTIMUM_CT_TOPMed_R3_chr20.nosex
OPTIMUM_CT_TOPMed_R3_chr21.vcf OPTIMUM_CT_TOPMed_R3_chr21.nosex
OPTIMUM_CT_TOPMed_R3_chr22.vcf OPTIMUM_CT_TOPMed_R3_chr22.nosex
raw/ IRLGREY
IRL-Grey_TOPMed_R3_chr1.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr1.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr2.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr2.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr3.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr3.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr4.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr4.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr5.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr5.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr6.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr6.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr7.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr7.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr8.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr8.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr9.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr9.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr10.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr10.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr11.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr11.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr12.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr12.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr13.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr13.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr14.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr14.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr15.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr15.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr16.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr16.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr17.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr17.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr18.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr18.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr19.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr19.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr20.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr20.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr21.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr21.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi
IRL-Grey_TOPMed_R3_chr22.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz
IRL-Grey_TOPMed_R3_chr22.recode_MAC5_Rsq40_miss95_splitMulti_28May2024.vcf.gz.tbi