A generated list of the modules available on the SCC in no particular order for the end users reference. Please note the modules with "(D)" next to them are the default module versions if if they were loaded without specifying the version to load.
In case the required modules are not listed below, SCC users can retrieve an up-to-date list of modules by executing the following command.
[sccuser@dev01 ~]# module avail
| -------------------------------------------------------- | ------------- | /usr/local/scc/modulefiles/all -------------------------------------- | ------------------------------- |
| bio/ADMIXTURE/1.3.0 | lang/Python/2.7.12-foss-2016b | ||
| bio/AFNI/20.0.09 | lang/Python/2.7.14-foss-2017b | ||
| bio/AFNI/20.0.17-foss-2018b-Python-3.6.6 | lang/Python/2.7.14-GCCcore-6.4.0-bare | ||
| bio/AFNI/21.1.07-foss-2018b-Python-3.6.6 | (D) | lang/Python/2.7.15-foss-2018b | |
| bio/annovar/2016Feb01-foss-2018b-Perl-5.28.0 | lang/Python/2.7.15-GCCcore-7.3.0-bare | ||
| bio/annovar/2018Apr16-foss-2018b-Perl-5.28.0 | lang/Python/2.7.15-GCCcore-8.2.0 | ||
| bio/annovar/2019Oct24-foss-2018b-Perl-5.28.0 | lang/Python/2.7.16-Anaconda2-2019.10 | ||
| bio/annovar/2019Oct24-foss-2020b-Perl-5.32.0 | (D) | lang/Python/2.7.16-GCCcore-8.3.0 | |
| bio/BamTools/2.4.2-foss-2018b | lang/Python/2.7.17-Anaconda-custom | ||
| bio/BamTools/2.5.1-foss-2018b | lang/Python/2.7.17-anaconda-2020a | ||
| bio/BamTools/2.5.1-GCC-10.2.0 | (D) | lang/Python/2.7.17-Anaconda-2021.03 (2.7:2.7.17) | |
| bio/Bazam/1.0.1-Java-1.8 | lang/Python/2.7.17-HiC-Pro-2.11.3 | ||
| bio/BCFtools/1.3-foss-2018b | lang/Python/2.7.18-GCCcore-9.3.0 | ||
| bio/BCFtools/1.3.1-foss-2018b | lang/Python/2.7.18-GCCcore-10.2.0 | ||
| bio/BCFtools/1.9-foss-2018b | lang/Python/3.6.5-Anaconda3-5.2.0 | ||
| bio/BCFtools/1.11-GCC-10.2.0 | lang/Python/3.6.6-foss-2018b | ||
| bio/BCFtools/1.12-GCC-10.2.0 | lang/Python/3.6.6-fosscuda-2018b | ||
| bio/BCFtools/1.14-GCC-10.2.0 | (D) | lang/Python/3.6.9-Anaconda3-2020.07 | |
| bio/bcl2fastq2/2.20.0-foss-2018b | lang/Python/3.6.9-Anaconda3-2021.03 (3.6:3.6.9) | ||
| bio/bcl2fastq2/2.20.0-foss-2020b | (D) | lang/Python/3.6.10-anaconda-2020a | |
| bio/Beagle/4.0-Java-1.8 | lang/Python/3.7.2-GCCcore-8.2.0 | ||
| bio/Beagle/4.1-Java-1.8 | lang/Python/3.7.4-Anaconda3-2019.10 | ||
| bio/Beagle/5.1-Java-1.8 | (D) | lang/Python/3.7.4-Anaconda3-2021.03 (3.7:3.7.4) | |
| bio/BEDOPS/2.4.35-foss-2018b | lang/Python/3.7.4-GCCcore-7.3.0 | ||
| bio/BEDOPS/2.4.35-foss-2020b | (D) | lang/Python/3.7.4-GCCcore-8.3.0 | |
| bio/BEDTools/2.25.0-foss-2018b | lang/Python/3.7.6-anaconda-2020a | ||
| bio/BEDTools/2.26.0-foss-2018b | lang/Python/3.8.2-GCCcore-9.3.0 | ||
| bio/BEDTools/2.27.1-foss-2018b | lang/Python/3.8.5-Anaconda3-2020.11 | ||
| bio/BEDTools/2.28.0-foss-2018b | lang/Python/3.8.5-Anaconda3-2021.03 (D:3.8:3.8.5) | ||
| bio/BEDTools/2.29.2-foss-2018b | lang/Python/3.8.6-GCCcore-10.2.0 | ||
| bio/BEDTools/2.30.0-GCC-10.2.0 | (D) | lang/R/3.4.4-foss-2018b-scc-2020a | |
| bio/BioPerl/1.7.2-foss-2018b-Perl-5.28.0 | lang/R/3.5.1-foss-2018b | ||
| bio/BioPerl/1.7.2-GCCcore-8.3.0 | lang/R/3.5.1-Python-3.8.5-Anaconda3-2020.11 (3.5:3.5.1) | ||
| bio/BioPerl/1.7.7-GCCcore-9.3.0 | lang/R/3.5.3-foss-2018b-scc-2020a | ||
| bio/BioPerl/1.7.8-GCCcore-10.2.0 | (D) | lang/R/3.6.2-foss-2018b-bare | |
| bio/Biopython/1.72-foss-2018b-Python-3.6.6 | lang/R/3.6.3-foss-2018b-scc-2020a | ||
| bio/Biopython/1.75-foss-2019b-Python-3.7.4 | lang/R/3.6.3-Python-3.8.5-Anaconda3-2020.11 (3.6:3.6.3) | ||
| bio/Biopython/1.78-foss-2020b | (D) | lang/R/4.0.2-foss-2018b-scc-2020a | |
| bio/BioServices/1.7.9-foss-2020b-Python-3.8.6 | lang/R/4.0.3-foss-2020b | ||
| bio/BLAST/2.10.0-Linux_x86_64 | lang/R/4.0.3-Python-3.8.5-Anaconda3-2020.11 (4.0:4.0.3) | ||
| bio/BLAST/2.11.0-Linux_x86_64 | (D) | lang/R/4.1.0-Python-3.8.5 | (D) |
| bio/Bowtie2/2.3.4.2-foss-2018b | lang/Rstudio/1.1.463-x86_64-fedora | ||
| bio/Bowtie2/2.4.1-foss-2018b | lang/Rstudio/1.2.5033-x86_64-fedora | ||
| bio/Bowtie2/2.4.2-GCC-10.2.0 | (D) | lang/Rstudio/1.4.1106-x86_64-fedora | |
| bio/BWA/0.7.15-bioconda | lang/Rstudio/1.4.1717-x86_64-fedora | ||
| bio/BWA/0.7.17-bioconda | (D) | lang/Rstudio/2021.09.0-351-x86_64-fedora | (D) |
| bio/bwakit/0.7.12_x64-linux | lang/SciPy-bundle/2019.10-foss-2019b-Python-2.7.16 | ||
| bio/bwakit/0.7.15_x64-linux | (D) | lang/SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 | |
| bio/CCRaVAT/2009 | lang/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4 | ||
| bio/Circos/0.69-6-GCCcore-7.3.0-Perl-5.28.0 | lang/SciPy-bundle/2020.03-foss-2019b-Python-3.7.4 | ||
| bio/Circos/0.69-9-GCCcore-9.3.0 | lang/SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 | ||
| bio/Circos/0.69-9-GCCcore-10.2.0 | (D) | lang/SciPy-bundle/2020.11-foss-2020b | |
| bio/CNVnator/0.4.1-foss-2018b-Python-2.7.15 | lang/SciPy-bundle/2020.11-fosscuda-2020b | (D) | |
| bio/ConnectomeWorkbench/1.3.2-foss-2018b | lang/Tkinter/3.6.6-foss-2018b-Python-3.6.6 | ||
| bio/ConnectomeWorkbench/1.3.2-rh_linux64 | lib/CFITSIO/3.47-GCCcore-10.2.0 | ||
| bio/ConnectomeWorkbench/1.4.2-foss-2018b | lib/freeglut/3.2.1-GCCcore-10.2.0 | ||
| bio/ConnectomeWorkbench/1.5.0-rh_linux64 | (D) | lib/libdrm/2.4.70-foss-2016b | |
| bio/crate-anon/0.19.2-Python-3.6.10 | lib/libgd/2.3.0-GCCcore-9.3.0 | ||
| bio/crate-anon/0.19.2-Python-3.8.5-Anacond3-2020.11 | (D) | lib/libgd/2.3.0-GCCcore-10.2.0 | (D) |
| bio/CSDtoolbox/1.1 | lib/libRmath/3.6.0-foss-2018b | ||
| bio/Cufflinks/2.2.1-foss-2018b | lib/libxslt/1.1.34-GCCcore-10.2.0 | ||
| bio/cutadapt/1.18-foss-2018b-Python-3.6.6 | lib/lxml/4.6.2-GCCcore-10.2.0 | ||
| bio/cutadapt/2.1-foss-2018b-Python-3.6.6 | lib/tbb/2020.3-GCCcore-10.2.0 | ||
| bio/cutadapt/2.1-foss-2020b-Python-3.8.6 | (D) | lib/TensorFlow/1.12.0-fosscuda-2018b-Python-3.6.6 | |
| bio/Cytoscape/3.6.1 | lib/TensorFlow/2.1.0-foss-2019b-Python-3.7.4 | ||
| bio/Cytoscape/3.7.2 | (D) | lib/TensorFlow/2.1.0-fosscuda-2019b-Python-3.7.4 | |
| bio/dicomtools/0.8.6-linux64 | lib/TensorFlow/2.1.0-gpu-anaconda-Python-3.6.10 | (D) | |
| bio/dicomtools/0.8.12-linux64 | (D) | lib/zlib/1.2.11-GCCcore-6.3.0 | |
| bio/EEGLAB/13_6_5b | math/MATLAB/2014b | ||
| bio/EEGLAB/14_1_1b | math/MATLAB/2016a | ||
| bio/EEGLAB/14_1_2b | math/MATLAB/2019b | ||
| bio/EEGLAB/2019_0 | math/MATLAB/2020b | (D) | |
| bio/EEGLAB/2019_1 | math/Octave/4.4.1-foss-2018b | ||
| bio/EEGLAB/2020_0 | mpi/impi/2018.3.222-iccifort-2018.3.222-GCC-7.3.0-2.30 | ||
| bio/EEGLAB/2021.0 | (D) | mpi/impi/2018.5.288-iccifort-2019.5.281 | |
| bio/EIGENSOFT/7.2.1-foss-2018b | mpi/impi/2019.6.166-iccifort-2020.0.166 | (D) | |
| bio/ExpansionHunter/2.5.5-linux_x86_64 | mpi/MPICH/3.2.1-GCC-7.3.0-2.30 | ||
| bio/ExpansionHunter/3.2.0-linux_x86_64 | mpi/MPICH/3.2.1-GCC-8.2.0-2.31.1 | ||
| bio/ExpansionHunter/3.2.2-linux_x86_64 | mpi/MPICH/3.2.1-GCC-8.3.0 | ||
| bio/ExpansionHunter/4.0.2-linux_x86_64 | (D) | mpi/MPICH/3.3.2-GCC-7.3.0-2.30 | |
| bio/ExpansionHunterDenovo/0.8.7-linux_x86_64 | mpi/MPICH/3.3.2-GCC-8.2.0-2.31.1 | ||
| bio/ExpansionHunterDenovo/0.9.0-linux_x86_64 | (D) | mpi/MPICH/3.3.2-GCC-8.3.0 | |
| bio/fastq-tools/0.8-foss-2018b | mpi/MPICH/3.3.2-GCC-9.3.0 | ||
| bio/fastq-tools/0.8.3-foss-2018b | (D) | mpi/MPICH/3.3.2-GCC-10.2.0 | (D) |
| bio/FastQTL/2.184-foss-2018b | mpi/MVAPICH2/2.3.3-GCC-7.3.0-2.30 | ||
| bio/freebayes/1.3.2-bioconda | mpi/MVAPICH2/2.3.3-GCC-8.2.0-2.31.1 | ||
| bio/freebayes/1.3.5-bioconda | (D) | mpi/MVAPICH2/2.3.3-GCC-8.3.0 | (D) |
| bio/FreeSurfer/6.0.0-centos6_x86_64 | mpi/OpenMPI/1.10.3-GCC-5.4.0-2.26 | ||
| bio/FreeSurfer/7.1.1-centos7_x86_64 | (D) | mpi/OpenMPI/2.1.1-GCC-6.4.0-2.28 | |
| bio/FSL/5.0.9-centos7_64 | mpi/OpenMPI/2.1.2-GCC-6.4.0-2.28 | ||
| bio/FSL/5.0.11-centos7_64 | mpi/OpenMPI/3.1.1-GCC-4.8.3 | ||
| bio/FSL/6.0.4-centos7_64 | mpi/OpenMPI/3.1.1-GCC-4.9.3-2.25 | ||
| bio/FSL/6.0.5.1-centos7_64 | (D) | mpi/OpenMPI/3.1.1-GCC-5.4.0-2.26 | |
| bio/GATK/3.5-Java-1.8.0_112 | mpi/OpenMPI/3.1.1-GCC-6.4.0-2.28 | ||
| bio/GATK/3.7-Java-1.8.0_112 | mpi/OpenMPI/3.1.1-GCC-7.3.0-2.30 | ||
| bio/GATK/4.2.0.0-Java-1.8 | (D) | mpi/OpenMPI/3.1.1-GCC-8.3.0 | |
| bio/GCTA/1.94.0beta-x86_64-kernel-3 | mpi/OpenMPI/3.1.1-gcccuda-2018b | ||
| bio/gctb/2.02-x86_64_avx2 | mpi/OpenMPI/3.1.3-GCC-8.2.0-2.31.1 | ||
| bio/gctb/2.03beta-x86_64_avx2 | mpi/OpenMPI/3.1.4-GCC-7.3.0-2.30 | ||
| bio/gctb/2.03beta-x86_64 | (D) | mpi/OpenMPI/3.1.4-GCC-8.2.0-2.31.1 | |
| bio/GD/2.69-GCCcore-7.3.0-Perl-5.28.0 | mpi/OpenMPI/3.1.4-GCC-8.3.0 | ||
| bio/GD/2.71-GCCcore-9.3.0 | mpi/OpenMPI/3.1.4-gcccuda-2019b | ||
| bio/GD/2.71-GCCcore-10.2.0 | mpi/OpenMPI/4.0.2-GCC-7.3.0-2.30 | ||
| bio/GD/2.73-GCCcore-10.2.0 | (D) | mpi/OpenMPI/4.0.2-GCC-8.2.0-2.31.1 | |
| bio/genipe/1.5.0-Python-3.7.10-Anaconda3-2021.05 | mpi/OpenMPI/4.0.2-GCC-8.3.0-2.32 | ||
| bio/GSEA/4.2.3 | mpi/OpenMPI/4.0.3-GCC-9.3.0 | ||
| bio/gtc2vcf/1.11-20210514 | mpi/OpenMPI/4.0.5-GCC-10.2.0 | ||
| bio/GTOOL/0.7.5 | mpi/OpenMPI/4.0.5-gcccuda-2020b | ||
| bio/hapgen2/2.1.2-linux_x86_64 | mpi/OpenMPI/4.1.0-GCC-10.2.0 | (D) | |
| bio/hapgen2/2.2.0-linux_x86_64 | (D) | numlib/arpack-ng/3.5.0-foss-2018b | |
| bio/hapi-ur/1.01 | numlib/CLHEP/2.4.1.0-foss-2018b | ||
| bio/Haplogrep/2.2.9-Java-1.8 | numlib/CLHEP/2.4.1.3-foss-2019b | (D) | |
| bio/Haploview/4.2-Java-1.8 | numlib/cuDNN/7.6.4.38-fosscuda-2018b | ||
| bio/Haploxt/V108-GCCcore-5.4.0 | numlib/cuDNN/7.6.4.38-gcccuda-2019b | (D) | |
| bio/Haploxt/V108-GCCcore-7.3.0 | numlib/FFTW/3.3.4-gompi-2014b | ||
| bio/Haploxt/V108-GCCcore-10.2.0 | (D) | numlib/FFTW/3.3.4-gompi-2016a | |
| bio/HiC-Pro/2.11.3-foss-2018b-Python-2.7.17 | numlib/FFTW/3.3.4-gompi-2016b | ||
| bio/HipSTR/0.6.1-foss-2018b | numlib/FFTW/3.3.6-gompi-2017b | ||
| bio/HipSTR/0.6.2-foss-2018b | (D) | numlib/FFTW/3.3.7-gompi-2018a | |
| bio/HISAT2/2.1.0-Linux_x86_64 | numlib/FFTW/3.3.8-gompi-2018b | ||
| bio/HISAT2/2.2.0-foss-2018b | numlib/FFTW/3.3.8-gompi-2019a | ||
| bio/HISAT2/2.2.0-Linux_x86_64 | numlib/FFTW/3.3.8-gompi-2019b | ||
| bio/HISAT2/2.2.1-Linux_x86_64 | (D) | numlib/FFTW/3.3.8-gompi-2020a | |
| bio/HMMER/3.1b2-foss-2018b | numlib/FFTW/3.3.8-gompi-2020b | ||
| bio/HMMER/3.2.1-foss-2018b | numlib/FFTW/3.3.8-gompic-2018b | ||
| bio/HMMER/3.3.2-gompi-2020b | (D) | numlib/FFTW/3.3.8-gompic-2019b | |
| bio/HTSlib/1.3-foss-2018b | numlib/FFTW/3.3.8-gompic-2020b | (D) | |
| bio/HTSlib/1.9-foss-2018b | numlib/GSL/2.1-foss-2018b | ||
| bio/HTSlib/1.11-GCC-10.2.0 | numlib/GSL/2.5-GCC-7.3.0-2.30 | ||
| bio/HTSlib/1.12-GCC-10.2.0 | numlib/GSL/2.5-GCC-8.2.0-2.31.1 | ||
| bio/HTSlib/1.14-GCC-10.2.0 | (D) | numlib/GSL/2.6-GCC-8.3.0 | |
| bio/IGV/2.4.19-Java-1.8 | numlib/GSL/2.6-GCC-9.3.0 | ||
| bio/IGV/2.8.0 | (D) | numlib/GSL/2.6-GCC-10.2.0 | (D) |
| bio/IMPUTE2/2.3.2_x86_64_dynamic | numlib/imkl/2018.3.222-gompi-2018b | ||
| bio/IMPUTE2/2.3.2_x86_64_static | (D) | numlib/imkl/2018.3.222-iimpi-2018b | |
| bio/inrich/1.0-Linux | numlib/imkl/2019.1.144-gompi-2019a | ||
| bio/inrich/1.1-Linux | (D) | numlib/imkl/2019.5.281-iimpi-2019b | |
| bio/InterViews/19-GCCcore-7.3.0 | numlib/imkl/2020.0.166-iimpi-2020.00 | ||
| bio/ldsc/1.0.1 | numlib/imkl/2020.1.217-gompi-2020a | (D) | |
| bio/LFPy/2.0.4-anaconda-python-3.7.4 | numlib/NLopt/2.4.2-GCCcore-7.3.0 | ||
| bio/LFPy/2.2-Python-3.8.5-Anaconda3-2020.11 | (D) | numlib/NLopt/2.6.1-GCCcore-8.2.0 | |
| bio/locuszoom/1.4 | numlib/NLopt/2.6.1-GCCcore-8.3.0 | ||
| bio/MAGMA/1.07b-foss-2018b | numlib/NLopt/2.6.1-GCCcore-9.3.0 | ||
| bio/MAGMA/1.09b-x86_64 | (D) | numlib/NLopt/2.6.2-GCCcore-10.2.0 | (D) |
| bio/MEME/5.1.1-foss-2018b-Perl-5.28.0-Python-3.6.6 | numlib/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0 | ||
| bio/MEME/5.1.1-foss-2020b-Perl-5.32.0-Python-3.8.6 | (D) | numlib/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0 | |
| bio/META/1.7-x86_64_dynamic | numlib/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1 | ||
| bio/META/1.7-x86_64_static | (D) | numlib/OpenBLAS/0.2.20-GCC-6.4.0-2.28 | |
| bio/METAL/20110325-GCCcore-10.2.0 | numlib/OpenBLAS/0.3.1-GCC-7.3.0-2.30-dynamic_arch | ||
| bio/METAL/20110325 | (D) | numlib/OpenBLAS/0.3.1-GCC-7.3.0-2.30 | |
| bio/minc-toolkit/1.0.09-centos7 | numlib/OpenBLAS/0.3.5-GCC-8.2.0-2.31.1 | ||
| bio/minc-toolkit/1.0.09 | (D) | numlib/OpenBLAS/0.3.7-GCC-7.3.0-2.30 | |
| bio/Minimac/20140110-foss-2016b | numlib/OpenBLAS/0.3.7-GCC-8.3.0 | ||
| bio/Minimac2/2014.9.15-foss-2016b | numlib/OpenBLAS/0.3.7-GCC-9.3.0 | ||
| bio/Minimac3/2.0.1-foss-2016b | numlib/OpenBLAS/0.3.9-GCC-7.3.0-2.30 | ||
| bio/Minimac4/1.0.2-foss-2018b | numlib/OpenBLAS/0.3.9-GCC-8.3.0 | ||
| bio/MitoSeek/1.3-GCCcore-7.3.0-Perl-5.28.0 | numlib/OpenBLAS/0.3.9-GCC-9.3.0 | ||
| bio/MitoSeek/1.3-GCCcore-10.2.0-Perl-5.32.0 | (D) | numlib/OpenBLAS/0.3.10-GCC-7.3.0-2.30 | |
| bio/mpiBLAST/1.6.0-foss-2016b | numlib/OpenBLAS/0.3.10-GCC-9.3.0 | ||
| bio/MRIcroGL/20180412-Linux | numlib/OpenBLAS/0.3.12-GCC-10.2.0 | (D) | |
| bio/MRIcroGL/20190904-Linux | (D) | numlib/qrupdate/1.1.2-foss-2018b | |
| bio/MRIcron/20121217-linux-x64 | numlib/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0 | ||
| bio/MRIcron/20160502-linux-x64 | numlib/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0 | ||
| bio/MRIcron/20190902-linux-x64 | (D) | numlib/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1 | |
| bio/mtdna-server-upload/1.4-Java-1.8 | numlib/ScaLAPACK/2.0.2-gompi-2017b-OpenBLAS-0.2.20 | ||
| bio/MToolBox/1.2.1 | numlib/ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20 | ||
| bio/MutPred2/2.0-Linux_x86_64 | numlib/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1 | ||
| bio/mutserve/1.3.1-Java-1.8 | numlib/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.7 | ||
| bio/ncbi-vdb/2.9.3-foss-2018b | numlib/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.9 | ||
| bio/NEURON/7.4-foss-2016b-nogui | numlib/ScaLAPACK/2.0.2-gompi-2019a-OpenBLAS-0.3.5 | ||
| bio/NEURON/7.6.7_Python-2.7.17 | numlib/ScaLAPACK/2.0.2-gompi-2019b | ||
| bio/NEURON/7.7.2_LFPy-2.2_Python-3.7.10 | numlib/ScaLAPACK/2.0.2-gompic-2018b-OpenBLAS-0.3.1 | ||
| bio/NEURON/7.8.2_LFPy-2.2_Python-3.6.9 | numlib/ScaLAPACK/2.0.2-gompic-2018b-OpenBLAS-0.3.7 | ||
| bio/NEURON/7.8.2_LFPy-2.2_Python-3.8.5 | (D) | numlib/ScaLAPACK/2.0.2-gompic-2018b-OpenBLAS-0.3.9 | |
| bio/nexus/0.3.3-anaconda-Python-3.6.10 | numlib/ScaLAPACK/2.0.2-gompic-2019b | ||
| bio/nexus/0.7.0-anaconda-Python-3.8.5 | (D) | numlib/ScaLAPACK/2.1.0-gompi-2020a | |
| bio/NGS/2.9.3-foss-2018b-Java-1.8 | numlib/ScaLAPACK/2.1.0-gompi-2020b | ||
| bio/NGS/2.11.0-GCCcore-10.2.0-Java-1.8 | (D) | numlib/ScaLAPACK/2.1.0-gompic-2020b | (D) |
| bio/PALM/alpha116 | numlib/SuiteSparse/5.1.2-foss-2018b-METIS-5.1.0 | ||
| bio/PennCNV/1.0.4-GCCcore-10.2.0-Perl-5.32.0 | numlib/SuiteSparse/5.8.1-foss-2020b-METIS-5.1.0 | (D) | |
| bio/PennCNV/1.0.5-GCCcore-10.2.0-Perl-5.32.0 | (D) | system/CUDA/7.5.18 | |
| bio/PGDSpider/2.1.1.0-Java-1.7.0_80 | system/CUDA/8.0.61 | ||
| bio/PGDSpider/2.1.1.5-Java-1.7.0_80 | (D) | system/CUDA/9.1.85 | |
| bio/picard/1.119-Java-1.7.0_80 | system/CUDA/9.2.88-GCC-7.3.0-2.30 | ||
| bio/picard/1.127-Java-1.7.0_80 | system/CUDA/10.0.130 | ||
| bio/picard/2.9.0-Java-1.8 | system/CUDA/10.1.243-GCC-8.3.0 | ||
| bio/picard/2.21.9-Java-11 | system/CUDA/10.1.243 | ||
| bio/picard/2.25.2-Java-11 | (D) | system/CUDA/10.2.89 | |
| bio/PLINK/1.07-foss-2018b | system/CUDA/11.1.1-GCC-10.2.0 | (D) | |
| bio/PLINK/1.07-x86_64 | system/CUDAcore/11.1.1 | ||
| bio/PLINK/1.9b_6.15-x86_64 | system/hwloc/2.0.3-GCCcore-8.2.0 | ||
| bio/PLINK/1.9b_6.21-x86_64 | toolchain/foss/2014b | ||
| bio/PLINK/1.9b_6.22-x86_64 | toolchain/foss/2016a | ||
| bio/PLINK/1.90-beta5-foss-2018b | (D) | toolchain/foss/2016b | |
| bio/PLINK2/2.00-alpha3-x86_64_avx2 | toolchain/foss/2017b | ||
| bio/PLINK2/2.00-alpha3-x86_64 | toolchain/foss/2018a | ||
| bio/PLINK2/20200124-avx2 | toolchain/foss/2018b | ||
| bio/PLINK2/20200124-x86_64 | toolchain/foss/2019a | ||
| bio/PLINK2/20210302-avx2 | toolchain/foss/2019b | ||
| bio/PLINK2/20210302-x86_64 | toolchain/foss/2020a | ||
| bio/PLINK2/20210420-avx2 | toolchain/foss/2020b | (D) | |
| bio/PLINK2/20210420-x86_64 | toolchain/fosscuda/2018b | ||
| bio/PLINK2/20210505-avx2 | toolchain/fosscuda/2019b | ||
| bio/PLINK2/20210505-x86_64 | (D) | toolchain/fosscuda/2020b | (D) |
| bio/PLINKSEQ/0.10-GCC-7.3.0-2.30 | toolchain/gcccuda/2018b | ||
| bio/PLINKSEQ/0.10-GCC-10.2.0 | (D) | toolchain/gcccuda/2019b | |
| bio/pybedtools/0.8.2-GCC-10.2.0 | toolchain/gcccuda/2020b | (D) | |
| bio/PyNIDM/3.7.1-Python-3.8.5-Anaconda3-2020.11 | toolchain/gomkl/2018b | ||
| bio/PyNIDM/20200225 | (D) | toolchain/gomkl/2019a | |
| bio/Pysam/0.16.0.1-GCC-10.2.0 | toolchain/gomkl/2020a | (D) | |
| bio/qctool/2.0.6-centos7 | toolchain/gompi/2014b | ||
| bio/qctool/2.0.8-centos7 | (D) | toolchain/gompi/2016a | |
| bio/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3 | toolchain/gompi/2016b | ||
| bio/RMBlast/2.10.0-x64-linux | toolchain/gompi/2017b | ||
| bio/RNAsnp/1.2-GCCcore-7.3.0-nogui | toolchain/gompi/2018a | ||
| bio/Roary/3.13.0 | toolchain/gompi/2018b | ||
| bio/RSEM/1.3.1-foss-2018b | toolchain/gompi/2019a | ||
| bio/RSEM/1.3.2-foss-2018b | toolchain/gompi/2019b | ||
| bio/RSEM/1.3.2-foss-2020b | toolchain/gompi/2020a | ||
| bio/RSEM/1.3.3-foss-2018b | toolchain/gompi/2020b | (D) | |
| bio/RSEM/1.3.3-foss-2020b | (D) | toolchain/gompic/2018b | |
| bio/SAMtools/0.1.20-foss-2018b | toolchain/gompic/2019b | ||
| bio/SAMtools/1.3.1-foss-2018b | toolchain/gompic/2020b | (D) | |
| bio/SAMtools/1.7-foss-2018b | toolchain/iccifort/2018.3.222-GCC-7.3.0-2.30 | ||
| bio/SAMtools/1.8-foss-2018b | toolchain/iimpi/2018b | ||
| bio/SAMtools/1.9-foss-2018b | toolchain/iimpi/2019b | ||
| bio/SAMtools/1.10-foss-2018b | toolchain/iimpi/2020.00 | (D) | |
| bio/SAMtools/1.11-GCC-10.2.0 | toolchain/intel/2018b | ||
| bio/SAMtools/1.12-GCC-10.2.0 | (D) | toolchain/intel/2019b | |
| bio/SHAPEIT/2.r904.glibcv2.17 | toolchain/intel/2020.00 | (D) | |
| bio/SHRiMP/2.2.3-foss-2018b | tools/Aspera-CLI/3.9.6.1467.159c5b1 | (D) | |
| bio/SHRiMP/2.2.3-foss-2020b | (D) | tools/Aspera-Connect/3.9.6 | |
| bio/smrtsv2/2.0.2 | tools/awscli/2.2.0 | ||
| bio/SNAP/1.0beta.23-foss-2016b | tools/binutils/2.25-GCCcore-4.9.3 | ||
| bio/SNAP/2013-11-29-foss-2018b | (D) | tools/binutils/2.25 | |
| bio/SNP2HLA/1.0.3 | tools/binutils/2.26-GCCcore-5.4.0 | ||
| bio/SNPTEST/2.5.2_CentOS6.5_x86_64_dynamic | tools/binutils/2.26 | ||
| bio/SNPTEST/2.5.2_CentOS6.5_x86_64_static | tools/binutils/2.27-GCCcore-6.3.0 | ||
| bio/SNPTEST/2.5.4-beta3_CentOS6.6_x86_64_dynamic | tools/binutils/2.27 | ||
| bio/SNPTEST/2.5.4-beta3_CentOS6.6_x86_64_static | (D) | tools/binutils/2.28-GCCcore-6.3.0 | |
| bio/spark-nlp/2.7.5-anaconda-Python-3.6.10 | tools/binutils/2.28-GCCcore-6.4.0 | ||
| bio/spark-nlp/3.0.3-anaconda-Python-3.8.5 | tools/binutils/2.28 | ||
| bio/spark-nlp/3.1.1-anaconda-Python-3.8.5 | (D) | tools/binutils/2.30-GCCcore-5.4.0 | |
| bio/SPM/8-r6313 | tools/binutils/2.30-GCCcore-7.3.0 | ||
| bio/SPM/12-r7771 | (D) | tools/binutils/2.30 | |
| bio/SRAToolKit/2.9.6-centos_linux64 | tools/binutils/2.31.1-GCCcore-8.2.0 | ||
| bio/SRAToolKit/2.10.3-centos_linux64 | tools/binutils/2.31.1 | ||
| bio/SRAToolKit/2.10.8-centos_linux64 | tools/binutils/2.32-GCCcore-4.9.3 | ||
| bio/SRAToolKit/2.11.0-centos_linux64 | (D) | tools/binutils/2.32-GCCcore-5.4.0 | |
| bio/STAR/2.7.1a-foss-2018b | tools/binutils/2.32-GCCcore-6.4.0 | ||
| bio/STAR/2.7.3a-foss-2018b | tools/binutils/2.32-GCCcore-7.3.0 | ||
| bio/STAR/2.7.7a-foss-2018b | tools/binutils/2.32-GCCcore-8.3.0 | ||
| bio/STAR/2.7.9a-foss-2020b | (D) | tools/binutils/2.32-GCCcore-9.2.0 | |
| bio/STIR/3.0-foss-2018b | tools/binutils/2.32 | ||
| bio/STIR/3.0-foss-2020b | tools/binutils/2.34-GCCcore-9.3.0 | ||
| bio/STIR/4.1.0-foss-2020b | (D) | tools/binutils/2.34 | |
| bio/StringTie/1.3.5-foss-2018b | tools/binutils/2.35-GCCcore-10.2.0 | ||
| bio/StringTie/1.3.6-foss-2018b | tools/binutils/2.35 | (D) | |
| bio/StringTie/2.1.0-GCCcore-7.3.0 | tools/bzip2/1.0.6-foss-2016a | ||
| bio/StringTie/2.1.0-GCCcore-10.2.0 | (D) | tools/bzip2/1.0.6-foss-2016b | |
| bio/SVS/8.4.4-RHEL | tools/bzip2/1.0.6-GCCcore-5.4.0 | ||
| bio/tabix/0.2.6-GCCcore-7.3.0 | tools/bzip2/1.0.6-GCCcore-6.4.0 | ||
| bio/TensorFlow/2.1.0-gpu-Python-3.6.10-Anaconda3 | tools/bzip2/1.0.6-GCCcore-7.3.0 | ||
| bio/TensorFlow/2.1.0-Python-3.6.10-Anaconda3 | tools/bzip2/1.0.6-GCCcore-8.2.0 | ||
| bio/TensorFlow/2.2.0-gpu-Python-3.8.5-Anaconda3-2020. | 11 | tools/bzip2/1.0.8-GCCcore-4.9.3 | |
| bio/TensorFlow/2.2.0-Python-3.8.5-Anaconda3-2020.11 | tools/bzip2/1.0.8-GCCcore-5.4.0 | ||
| bio/TensorFlow/2.7.0-gpu-Python-3.9 | (D) | tools/bzip2/1.0.8-GCCcore-6.4.0 | |
| bio/TopHat/2.1.2-foss-2018b | tools/bzip2/1.0.8-GCCcore-7.3.0 | ||
| bio/TopHat/2.1.2-foss-2020b | (D) | tools/bzip2/1.0.8-GCCcore-8.3.0 | |
| bio/TRhist/1.0.1-Java-1.7 | tools/bzip2/1.0.8-GCCcore-9.3.0 | ||
| bio/Trinculo/0.96 | tools/bzip2/1.0.8-GCCcore-10.2.0 | (D) | |
| bio/VCFtools/0.1.13-foss-2018b-Perl-5.28.0 | tools/cURL/7.60.0-GCCcore-7.3.0 | ||
| bio/VCFtools/0.1.14-foss-2018b-Perl-5.28.0 | tools/cURL/7.63.0-GCCcore-8.2.0 | ||
| bio/VCFtools/0.1.15-foss-2018b-Perl-5.28.0 | tools/cURL/7.66.0-GCCcore-7.3.0 | ||
| bio/VCFtools/0.1.16-foss-2018b-Perl-5.28.0 | tools/cURL/7.66.0-GCCcore-8.3.0 | ||
| bio/VCFtools/0.1.16-GCC-10.2.0 | (D) | tools/cURL/7.69.1-GCCcore-9.3.0 | |
| bio/xmedcon/0.16.2-GCCcore-7.3.0-nogui | tools/cURL/7.72.0-GCCcore-10.2.0 | (D) | |
| bio/Xpression/stable | tools/DB/18.1.32-GCCcore-9.3.0 | ||
| cae/GATE/8.2-foss-2018b-Python-2.7.15 | tools/DB/18.1.40-GCCcore-10.2.0 | (D) | |
| cae/GATE/9.0-foss-2019b-Python-3.7.4 | (D) | tools/expat/2.1.1-foss-2016a | |
| compiler/GCC/system | tools/expat/2.2.0-foss-2016b | ||
| compiler/GCC/4.4.7 | tools/expat/2.2.0-GCCcore-5.4.0 | ||
| compiler/GCC/4.7.4 | tools/expat/2.2.4-GCCcore-6.4.0 | ||
| compiler/GCC/4.8.3 | tools/expat/2.2.5-GCCcore-7.3.0 | ||
| compiler/GCC/4.8.5 | tools/expat/2.2.6-GCCcore-8.2.0 | ||
| compiler/GCC/4.9.3-2.25 | tools/expat/2.2.7-GCCcore-7.3.0 | ||
| compiler/GCC/5.4.0-2.26 | tools/expat/2.2.7-GCCcore-8.3.0 | ||
| compiler/GCC/6.3.0-2.27 | tools/expat/2.2.9-GCCcore-9.3.0 | ||
| compiler/GCC/6.3.0-2.28 | tools/expat/2.2.9-GCCcore-10.2.0 | (D) | |
| compiler/GCC/6.4.0-2.28 | tools/Firefox/89.0b6 | ||
| compiler/GCC/7.3.0-2.30 | tools/gettext/0.19.6 | ||
| compiler/GCC/8.2.0-2.31.1 | tools/gettext/0.19.7-foss-2016a | ||
| compiler/GCC/8.3.0 | tools/gettext/0.19.8-foss-2016b | ||
| compiler/GCC/8.3.0-2.32 | tools/gettext/0.19.8-GCCcore-5.4.0 | ||
| compiler/GCC/9.3.0 | tools/gettext/0.19.8 | ||
| compiler/GCC/10.2.0 | (D) | tools/gettext/0.19.8.1-GCCcore-6.4.0 | |
| compiler/GCCcore/system | tools/gettext/0.19.8.1-GCCcore-7.3.0 | ||
| compiler/GCCcore/4.9.3 | tools/gettext/0.19.8.1-GCCcore-8.2.0 | ||
| compiler/GCCcore/5.4.0 | tools/gettext/0.19.8.1 | ||
| compiler/GCCcore/6.3.0 | tools/gettext/0.20.1-GCCcore-7.3.0 | ||
| compiler/GCCcore/6.4.0 | tools/gettext/0.20.1-GCCcore-8.3.0 | ||
| compiler/GCCcore/7.3.0 | tools/gettext/0.20.1-GCCcore-9.3.0 | ||
| compiler/GCCcore/8.2.0 | tools/gettext/0.20.1 | ||
| compiler/GCCcore/8.3.0 | tools/gettext/0.21-GCCcore-10.2.0 | ||
| compiler/GCCcore/9.2.0 | tools/gettext/0.21 | (D) | |
| compiler/GCCcore/9.3.0 | tools/Ghostscript/9.23-GCCcore-7.3.0 | ||
| compiler/GCCcore/10.2.0 | (D) | tools/Ghostscript/9.27-GCCcore-8.2.0 | |
| compiler/Go/1.14.1 | tools/Ghostscript/9.50-GCCcore-8.3.0 | ||
| compiler/Go/1.16.6 | (D) | tools/Ghostscript/9.52-GCCcore-9.3.0 | |
| compiler/icc/2018.3.222-GCC-7.3.0-2.30 | tools/Ghostscript/9.53.3-GCCcore-10.2.0 | (D) | |
| compiler/ifort/2018.3.222-GCC-7.3.0-2.30 | tools/git-lfs/2.11.0-linux-amd64 | ||
| compiler/impi/2021.1.1-intel-compilers-2021.1.2 | tools/git-lfs/2.13.3-linux-amd64 | (D) | |
| compiler/intel-compilers/2021.1.2 | tools/git/2.23.0-GCCcore-7.3.0 | ||
| compiler/LLVM/3.8.0-foss-2016a | tools/git/2.23.0-GCCcore-8.3.0-nodocs | ||
| compiler/LLVM/3.8.1-foss-2016b | tools/git/2.25.1-GCCcore-7.3.0 | ||
| compiler/LLVM/5.0.0-foss-2017b | tools/git/2.25.1-GCCcore-8.3.0 | ||
| compiler/LLVM/6.0.0-GCCcore-7.3.0 | tools/git/2.25.1-GCCcore-9.3.0-nodocs | ||
| compiler/LLVM/7.0.1-GCCcore-8.2.0 | tools/git/2.28.0-GCCcore-10.2.0-nodocs | (D) | |
| compiler/LLVM/9.0.0-GCCcore-7.3.0 | tools/GLPK/4.65-GCCcore-7.3.0 | ||
| compiler/LLVM/9.0.0-GCCcore-8.3.0 | tools/GLPK/4.65-GCCcore-9.3.0 | ||
| compiler/LLVM/9.0.1-GCCcore-9.3.0 | tools/GLPK/4.65-GCCcore-10.2.0 | (D) | |
| compiler/LLVM/11.0.0-GCCcore-10.2.0 | (D) | tools/gzip/1.9-GCCcore-7.3.0 | |
| data/BeautifulSoup/4.9.1-GCCcore-10.2.0-Python-3.8.6 | tools/gzip/1.10-GCCcore-8.3.0 | ||
| data/DB_File/1.855-GCCcore-10.2.0 | tools/gzip/1.10-GCCcore-9.3.0 | ||
| data/h5py/2.10.0-foss-2019b-SciPy-bundle-2020.03 | tools/gzip/1.10-GCCcore-10.2.0 | (D) | |
| data/ROOT/6.24.00-foss-2020b-Python-3.8.6 | tools/help2man/1.47.4-GCCcore-5.4.0 | ||
| devel/Autoconf/2.69-foss-2016a | tools/help2man/1.47.4-GCCcore-6.3.0 | ||
| devel/Autoconf/2.69-foss-2016b | tools/help2man/1.47.4-GCCcore-6.4.0 | ||
| devel/Autoconf/2.69-GCC-4.9.3-2.25 | tools/help2man/1.47.4-GCCcore-7.3.0 | ||
| devel/Autoconf/2.69-GCC-5.4.0-2.26 | tools/help2man/1.47.4 | ||
| devel/Autoconf/2.69-GCCcore-4.9.3 | tools/help2man/1.47.7-GCCcore-8.2.0 | ||
| devel/Autoconf/2.69-GCCcore-5.4.0 | tools/help2man/1.47.8-GCCcore-4.9.3 | ||
| devel/Autoconf/2.69-GCCcore-6.4.0 | tools/help2man/1.47.8-GCCcore-7.3.0 | ||
| devel/Autoconf/2.69-GCCcore-7.3.0 | tools/help2man/1.47.8-GCCcore-8.2.0 | ||
| devel/Autoconf/2.69-GCCcore-8.2.0 | tools/help2man/1.47.8-GCCcore-8.3.0 | ||
| devel/Autoconf/2.69-GCCcore-8.3.0 | tools/help2man/1.47.10-GCCcore-9.2.0 | ||
| devel/Autoconf/2.69-GCCcore-9.3.0 | tools/help2man/1.47.12-GCCcore-9.3.0 | ||
| devel/Autoconf/2.69-GCCcore-10.2.0 | tools/help2man/1.47.16-GCCcore-10.2.0 | (D) | |
| devel/Autoconf/2.69 | (D) | tools/HPL/2.2-foss-2018b | |
| devel/Automake/1.15-foss-2016a | tools/HPL/2.2-intel-2018b | ||
| devel/Automake/1.15-foss-2016b | tools/HPL/2.3-foss-2019b | ||
| devel/Automake/1.15-GCC-4.9.3-2.25 | tools/HPL/2.3-foss-2020b | ||
| devel/Automake/1.15-GCC-5.4.0-2.26 | tools/HPL/2.3-intel-2019b | ||
| devel/Automake/1.15-GCCcore-4.9.3 | tools/HPL/2.3-intel-2020.00 | (D) | |
| devel/Automake/1.15-GCCcore-5.4.0 | tools/hypothesis/5.41.2-GCCcore-10.2.0 | ||
| devel/Automake/1.15 | tools/libarchive/3.4.3-GCCcore-10.2.0 | ||
| devel/Automake/1.15.1-GCCcore-6.4.0 | tools/Meson/0.50.0-GCCcore-8.2.0-Python-3.7.2 | ||
| devel/Automake/1.15.1-GCCcore-7.3.0 | tools/Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4 | ||
| devel/Automake/1.16.1-GCCcore-7.3.0 | tools/Meson/0.53.2-GCCcore-9.3.0-Python-3.8.2 | ||
| devel/Automake/1.16.1-GCCcore-8.2.0 | tools/Meson/0.55.1-GCCcore-9.3.0-Python-3.8.2 | ||
| devel/Automake/1.16.1-GCCcore-8.3.0 | tools/Meson/0.55.3-GCCcore-10.2.0 | (D) | |
| devel/Automake/1.16.1-GCCcore-9.3.0 | tools/Ninja/1.9.0-GCCcore-8.2.0 | ||
| devel/Automake/1.16.2-GCCcore-10.2.0 | (D) | tools/Ninja/1.9.0-GCCcore-8.3.0 | |
| devel/Autotools/20150215-foss-2016a | tools/Ninja/1.10.0-GCCcore-9.3.0 | ||
| devel/Autotools/20150215-foss-2016b | tools/Ninja/1.10.1-GCCcore-10.2.0 | (D) | |
| devel/Autotools/20150215-GCC-4.9.3-2.25 | tools/numactl/2.0.9-GCC-4.8.3 | ||
| devel/Autotools/20150215-GCC-5.4.0-2.26 | tools/numactl/2.0.11-GCC-4.9.3-2.25 | ||
| devel/Autotools/20150215-GCCcore-4.9.3 | tools/numactl/2.0.11-GCC-5.4.0-2.26 | ||
| devel/Autotools/20150215-GCCcore-5.4.0 | tools/numactl/2.0.11-GCCcore-4.9.3 | ||
| devel/Autotools/20150215 | tools/numactl/2.0.11-GCCcore-5.4.0 | ||
| devel/Autotools/20170619-GCCcore-6.4.0 | tools/numactl/2.0.11-GCCcore-6.4.0 | ||
| devel/Autotools/20170619-GCCcore-7.3.0 | tools/numactl/2.0.11-GCCcore-7.3.0 | ||
| devel/Autotools/20180311-GCCcore-7.3.0 | tools/numactl/2.0.12-GCCcore-7.3.0 | ||
| devel/Autotools/20180311-GCCcore-8.2.0 | tools/numactl/2.0.12-GCCcore-8.2.0 | ||
| devel/Autotools/20180311-GCCcore-8.3.0 | tools/numactl/2.0.12-GCCcore-8.3.0 | ||
| devel/Autotools/20180311-GCCcore-9.3.0 | tools/numactl/2.0.13-GCCcore-9.3.0 | ||
| devel/Autotools/20200321-GCCcore-10.2.0 | (D) | tools/numactl/2.0.13-GCCcore-10.2.0 | (D) |
| devel/Bazel/0.18.0-GCCcore-7.3.0 | tools/Pandoc/2.9.2 | ||
| devel/Bazel/0.20.0-GCCcore-7.3.0 | tools/Pandoc/2.10 | (D) | |
| devel/Bazel/0.29.1-GCCcore-8.3.0 | tools/parallel/20171122-foss-2017b | ||
| devel/Bazel/3.6.0-GCCcore-9.3.0 | tools/parallel/20190922-foss-2016a | ||
| devel/Bazel/3.7.1-GCCcore-8.3.0 | tools/parallel/20190922-foss-2016b | ||
| devel/Bazel/3.7.2-GCCcore-10.2.0 | (D) | tools/parallel/20190922-foss-2017b | |
| devel/Boost/1.67.0-foss-2018b | tools/parallel/20190922-GCCcore-7.3.0 | ||
| devel/Boost/1.68.0-foss-2018b-Python-2.7.15 | tools/parallel/20190922-GCCcore-8.3.0 | ||
| devel/Boost/1.68.0-foss-2018b-Python-3.6.6 | tools/parallel/20190922 | ||
| devel/Boost/1.71.0-gompi-2019b | tools/parallel/20200522-foss-2016a | ||
| devel/Boost/1.74.0-GCC-10.2.0 | (D) | tools/parallel/20200522-foss-2016b | |
| devel/buildenv/default-foss-2017b | tools/parallel/20200522-foss-2017b | ||
| devel/buildenv/default-foss-2018b | tools/parallel/20200522-GCCcore-7.3.0 | ||
| devel/buildenv/default-foss-2019b | tools/parallel/20200522-GCCcore-8.3.0 | ||
| devel/buildenv/default-foss-2020b | (D) | tools/parallel/20200522-GCCcore-9.3.0 | |
| devel/CMake/3.5.2-foss-2016a | tools/parallel/20200522-GCCcore-10.2.0 | ||
| devel/CMake/3.6.1-foss-2016b | tools/parallel/20200522 | (D) | |
| devel/CMake/3.6.1-GCC-5.4.0-2.26 | tools/rclone/1.42-amd64 | ||
| devel/CMake/3.9.5-GCCcore-6.4.0 | tools/rclone/1.55.0-amd64 | (D) | |
| devel/CMake/3.10.2-GCCcore-6.4.0 | tools/re2c/1.2.1-GCCcore-8.3.0 | ||
| devel/CMake/3.11.4-GCCcore-7.3.0 | tools/re2c/1.3-GCCcore-9.3.0 | ||
| devel/CMake/3.12.1-GCCcore-7.3.0 | tools/re2c/2.0.3-GCCcore-10.2.0 | (D) | |
| devel/CMake/3.13.3-GCCcore-8.2.0 | tools/rsync/3.1.2-GCC-10.2.0 | ||
| devel/CMake/3.15.3-GCCcore-7.3.0 | tools/rsync/3.2.2-GCC-10.2.0 | ||
| devel/CMake/3.15.3-GCCcore-8.3.0 | tools/rsync/3.2.3-GCC-10.2.0 | (D) | |
| devel/CMake/3.16.4-GCCcore-9.3.0 | tools/sbt/1.2.6-Java-1.8 | ||
| devel/CMake/3.18.4-GCCcore-10.2.0 | (D) | tools/Singularity/3.5.3 | |
| devel/glew/2.1.0-GCCcore-10.2.0 | tools/Singularity/3.7.2 | ||
| devel/GObject-Introspection/1.66.1-GCCcore-10.2.0 | tools/Singularity/3.8.4 | ||
| devel/libxkbcommon/0.6.1-foss-2016a | tools/Singularity/3.8.5 | (D) | |
| devel/M4/1.4.18-GCCcore-6.3.0 | tools/stubl/0.0.10 | ||
| devel/Mako/1.0.4-foss-2016b-Python-2.7.12 | tools/Szip/2.1.1-GCCcore-7.3.0 | ||
| devel/Mako/1.0.7-foss-2018b-Python-2.7.15 | (D) | tools/Szip/2.1.1-GCCcore-8.2.0 | |
| devel/Maven/3.6.0 | tools/Szip/2.1.1-GCCcore-8.3.0 | ||
| devel/Maven/3.6.3 | (D) | tools/Szip/2.1.1-GCCcore-9.3.0 | |
| devel/protobuf/3.14.0-GCCcore-10.2.0 | tools/Szip/2.1.1-GCCcore-10.2.0 | (D) | |
| devel/Qt5/5.7.0-foss-2016a | tools/tcsh/6.20.00-GCCcore-7.3.0 | ||
| devel/Qt5/5.7.0-foss-2016b | (D) | tools/tcsh/6.22.04-GCCcore-10.2.0 | (D) |
| devel/SQLite/3.29.0-GCCcore-7.3.0 | tools/unrar/6.12-x86_64 | ||
| devel/SWIG/4.0.2-GCCcore-10.2.0 | tools/UnZip/6.0-GCCcore-10.2.0 | ||
| devel/wget/1.20.1-GCCcore-7.3.0 | tools/util-linux/2.31-GCCcore-6.4.0 | ||
| devel/wget/1.20.1-GCCcore-8.3.0 | tools/util-linux/2.32-GCCcore-7.3.0 | ||
| devel/wget/1.20.3-GCCcore-9.3.0 | tools/util-linux/2.33-GCCcore-8.2.0 | ||
| devel/wget/1.20.3-GCCcore-10.2.0 | (D) | tools/util-linux/2.34-GCCcore-7.3.0 | |
| lang/Anaconda/1.8.0 | tools/util-linux/2.34-GCCcore-8.3.0 | ||
| lang/Anaconda/2.3.0 | (D) | tools/util-linux/2.35-GCCcore-9.3.0 | |
| lang/Anaconda2/5.2.0 | tools/util-linux/2.36-GCCcore-10.2.0 | (D) | |
| lang/Anaconda2/2019.10 | (D) | tools/wheel/0.31.1-fosscuda-2018b-Python-3.6.6 | |
| lang/Anaconda3/5.2.0 | tools/wkhtmltopdf/0.12.3-Linux-x86_64 | ||
| lang/Anaconda3/5.3.0 | tools/wkhtmltox/0.12.4-Linux-x86_64 | ||
| lang/Anaconda3/2019.10 | tools/wkhtmltox/0.12.5-centos7-x86_64 | ||
| lang/Anaconda3/2020.02 | tools/wkhtmltox/0.12.6-1-centos7-x86_64 | (D) | |
| lang/Anaconda3/2020.07 | tools/xxHash/0.8.0-GCC-10.2.0 | ||
| lang/Anaconda3/2020.11 | (D) | tools/XZ/5.2.2-foss-2016a | |
| lang/Bison/3.0.4-GCCcore-6.3.0 | tools/XZ/5.2.2-foss-2016b | ||
| lang/flex/2.6.3-GCCcore-6.3.0 | tools/XZ/5.2.2-GCCcore-4.9.3 | ||
| lang/FriBidi/1.0.10-GCCcore-10.2.0 | tools/XZ/5.2.2-GCCcore-5.4.0 | ||
| lang/Java/1.6.0_45 (1.6:1.6.0) | tools/XZ/5.2.3-GCCcore-6.4.0 | ||
| lang/Java/1.7.0_80 (1.7:1.7.0) | tools/XZ/5.2.4-GCCcore-7.3.0 | ||
| lang/Java/1.8.0_92 | tools/XZ/5.2.4-GCCcore-8.2.0 | ||
| lang/Java/1.8.0_112 | tools/XZ/5.2.4-GCCcore-8.3.0 | ||
| lang/Java/1.8.0_241 | tools/XZ/5.2.5-GCCcore-9.3.0 | ||
| lang/Java/1.8.0_281 (D:1.8:1.8.0) | tools/XZ/5.2.5-GCCcore-10.2.0 | (D) | |
| lang/Java/11.0.6 | tools/Z3/4.8.9-GCCcore-9.3.0 | ||
| lang/Java/11.0.10-oracle (11:11.0) | tools/Zip/3.0-GCCcore-7.3.0 | ||
| lang/Java/13.0.2 (13:13.0) | tools/Zip/3.0-GCCcore-8.3.0 | ||
| lang/Java/15.0.2-oracle (15:15.0) | tools/Zip/3.0-GCCcore-9.3.0 | ||
| lang/Miniconda2/4.7.10 | tools/Zip/3.0-GCCcore-10.2.0 | (D) | |
| lang/Miniconda3/4.7.10 | vis/Gdk-Pixbuf/2.36.12-foss-2018b | ||
| lang/Miniconda3/4.7.12.1 | vis/Gdk-Pixbuf/2.40.0-GCCcore-10.2.0 | (D) | |
| lang/Miniconda3/4.9.2 | (D) | vis/GL2PS/1.4.0-GCCcore-10.2.0 | |
| lang/Perl/5.22.1-foss-2016a | vis/GLib/2.49.5-foss-2016b | ||
| lang/Perl/5.24.0-foss-2016b | vis/Graphviz/2.40.1-foss-2018b | ||
| lang/Perl/5.24.0-GCCcore-5.4.0 | vis/Graphviz/2.47.0-GCCcore-10.2.0-Java-11 | (D) | |
| lang/Perl/5.26.0-foss-2017b | vis/GtkSourceView/4.4.0-GCCcore-8.2.0 | ||
| lang/Perl/5.26.0-GCCcore-6.4.0 | vis/GTS/0.7.6-foss-2018b | ||
| lang/Perl/5.28.0-GCCcore-7.3.0 | vis/GTS/0.7.6-GCCcore-10.2.0 | (D) | |
| lang/Perl/5.28.1-GCCcore-8.2.0 | vis/HarfBuzz/2.6.7-GCCcore-10.2.0 | ||
| lang/Perl/5.30.0-GCCcore-7.3.0 | vis/libGLU/9.0.0-foss-2016a-Mesa-11.2.1 | ||
| lang/Perl/5.30.0-GCCcore-8.3.0 | vis/libGLU/9.0.0-foss-2016b | (D) | |
| lang/Perl/5.30.2-GCCcore-9.3.0 | vis/matplotlib/3.0.0-foss-2018b-Python-3.6.6 | ||
| lang/Perl/5.32.0-GCCcore-10.2.0 | (D) | vis/matplotlib/3.3.3-foss-2020b | (D) |
| lang/PSPP/1.0.1-centos7 | vis/Mesa/11.2.1-foss-2016a | ||
| lang/PSPP/1.0.1-nogui-centos7 | vis/Mesa/12.0.2-foss-2016b | (D) | |
| lang/PSPP/1.2.0-centos7 | vis/motif/2.3.8-GCCcore-10.2.0 | ||
| lang/PSPP/1.2.0-nogui-centos7 | (D) | vis/Pango/1.47.0-GCCcore-10.2.0 | |
| lang/Python/2.6.9-Anaconda-2.3.0 | vis/poppler/0.70.1-foss-2018b | ||
| lang/Python/2.7.11-foss-2016a | vis/PyQt5/5.15.1-GCCcore-10.2.0 | ||
| -------------------------------------------------------- | --------- /us | r/local/scc/modulefiles/quarantine ----------------------------------- | ------------------------------- |
| ADAM/0.22.0 Hadoop/Hail/0.1 | PLINK2/1.90b-20141220 | ||
| AFNI/17.0.13_openmp_64 (D) Hadoop/Hortonworks/hdp-3.1 | PLINK2/1.90b2t | ||
| AFNI/17.0.13_xorg7_64 hapgen2/2.1 | 0.2 | PLINK2/1.90b3.46 | |
| AFNI/2011_12_21_1014_linuxgcc33_64 hapgen2/2.2 | 0 | (D) PLINK2/2.00-alpha3-x86_64_avx2 | |
| AFNI/2011_12_21_1014_openmp_64 HaplotypeAs | signer/1.1 | PLINK2/2.00-alpha3-x86_64 | |
| AFNI/2011_12_21_1014 Haploxt/108 | PLINK2/20200124-avx2 | ||
| ALAMUT/1.3.1 Helisphere/ | 1.2.740 | PLINK2/20200124-x86_64 | |
| annovar/2012Feb23 HipSTR/v0.6 | 0.1 | PLINK2/20210302-avx2 | |
| annovar/2016Feb01 Hisat2/2.1. | 0 | PLINK2/20210302-x86_64 | |
| annovar/2018Apr16 HMMER/3.1b2 | PLINK2/20210420-avx2 | ||
| annovar/20141112 (D) IGV/2.3.78 | PLINK2/20210420-x86_64 | (D) | |
| ANTS/V_1 IGV/2.3.91 | (D) PLINKSEQ/0.08 | ||
| ANTS/2.1.0 IMPUTE2/2.2 | 0.2 | PLINKSEQ/0.10 | (D) |
| ANTS/2.1.3 (D) IMPUTE2/2.3 | 0.2 | (D) PRSice/1.2.3 | |
| Batch/pbs INRICH/1.0 | PRSice/1.25 | ||
| BCFTOOLS/1.3 INRICH/1.1 | (D) PRSice/2.2.0 | (D) | |
| BCFTOOLS/1.3.1 JAVA/1.6.0_ | 45 | (1.6:1.6.0) PSPP/0.10.1-nogui | |
| BCFTOOLS/1.9 (D) JAVA/1.7.0_ | 80 | (1.7:1.7.0) PSPP/0.10.2-nogui | (D) |
| BEDOPS/2.3.0 JAVA/1.8.0_ | 112 | PYTHON/2.6 | |
| BEDOPS/2.4.25 (D) JAVA/1.8.0_ | 281 | (D:1.8:1.8.0) PYTHON/2.7 | |
| BEDTOOLS2/2.18.1 JVARKIT/1.1 | 33 | PYTHON/2.7.17-Anaconda-2021.03 | |
| BEDTOOLS2/2.25.0 lang/Anacon | da3/2019.10 | PYTHON/3.6_fqc | |
| BEDTOOLS2/2.27.1 (D) LDSC/1.0.0 | PYTHON/3.6 | ||
| BLAST+/2.2.28 LDSC/1.0.1 | (D) PYTHON/3.6.9-Anaconda3-2021.03 | ||
| BLAST/2.2.18 Library/cen | tos6.0 | PYTHON/3.8.5-Anaconda3-2021.03 | (D) |
| BLAST/2.2.27 Library/cen | tos7 | (D) QT/4.8.7 | |
| BLAST/2.2.28new LifeScope/2 | .5.1 | QUEUE/3.5 | |
| BLAST/2.2.28 LTSOFT/5.0. | 1 | R/3.2.1 | |
| BLAST/2.2.29 MACH/1.0 | R/3.2.5 | ||
| BLAST/2.2.30 MACS/1.4.2 | R/3.3.2_rserver | ||
| BLAST/2.2.31 MAGMA/1.04 | R/3.3.2 | ||
| BLAST/2.3.0 (D) MAGMA/1.06 | (D) R/3.4.1 | ||
| BOOST/1.50.0 MATLAB/R201 | 4b | R/3.4.3_openblas | |
| BOOST/1.60.0 (D) MATLAB/R201 | 6a | R/3.4.3 | |
| BWA/0.5.7 MATLAB/2014 | b | R/3.4.4 | |
| BWA/0.7.08 MATLAB/2016 | a | (D) R/3.5.1-Python-3.8.5-Anaconda3-2 020.11 (3.5:3.5.1) | |
| BWA/0.7.15 (D) MAVEN/3.3.9 | R/3.6.3-Python-3.8.5-Anaconda3-2 020.11 (3.6:3.6.3) | ||
| BWAKIT/0.7.12 MAVEN/3.6.0 | (D) R/4.0.2_petronis | ||
| BWAKIT/0.7.15 (D) MCR/2.3.2 | R/4.0.3-Python-3.8.5-Anaconda3-2 020.11 (D:4.0:4.0.3) | ||
| CASAVA/1.8.2 medcon/0.10 | 0.5 | RMBlast/2.2.28 | |
| CCRaVAT/2009 medcon/0.14 | 0.1 | (D) RMINC/RMINC_0.5 | |
| CIRCOS/0.64 MEME/4.10.2 | -gcc-openmpi- | 1.10.4-qlc RNAsnp/1.1 | |
| CIRCOS/0.67-5 MEME/4.10.2 | #NAME? | RNAsnp/1.2 | (D) |
| CIRCOS/0.67-7 MEME/4.11.3 | -gcc-openmpi- | 1.10.4-qlc RSEM/1.3.1 | |
| CIRCOS/0.69-4 (D) MEME/4.11.3 | #NAME? | (D) RSTUDIO/1.0.153 | |
| CIVET/1.1.12 MERLIN/1.1. | 2 | RSTUDIO/1.1.463 | (D) |
| CMAKE/3.0.2 META/v1.7 | RVTEST/v1.9.7 | ||
| Connectome/1.2.3 METACARPA/1 | .0.1 | RVTEST/v1.9.9 | |
| Connectome/1.3.2 (D) METAL/2011- | 25-Mar | RVTEST/2.0.3 | (D) |
| CUDA/10.2.89 Microsoft-R | /3.4.0 | SAMTOOLS/0.1.19 | |
| CUFFLINK/2.2.1 Microsoft-R | /3.4.3 | SAMTOOLS/1.1 | |
| CUTADAPT/1.3 Microsoft-R | /3.4.4 | (D) SAMTOOLS/1.3 | |
| CUTADAPT/1.12 (D) MINC/minc-t | oolkit-1.0.01 | SAMTOOLS/1.3.1 | |
| Cytoscape/3.6.1 MINC/minc-t | oolkit-1.0.07 | SAMTOOLS/1.9 | (D) |
| DCMTK/3.6.4 MINC/minc-t | oolkit-1.9.16 | SBT/1.2.6 | |
| DeepSEA/0.94 MINC/pyminc | +python-2.7.8 | +minc-toolkit-1.0.01 SHAPEIT/v1_r416 | |
| devel/CMake/3.7.1 MINC/2011.1 | 1 | (D) SHAPEIT/v2_r644 | |
| dicomtools/0.8.6 MINIMAC/201 | 2.5.29 | SHAPEIT/v2_r790 | |
| DINDEL/1.0 MISO/1.0 | SHAPEIT/v2_r900 | ||
| EEGLAB/13.3.2 MITOSEEK/1. | 1 | SHAPEIT/v2_837 | (D) |
| EEGLAB/13.4.4b MPIBLAST/1. | 6 | SHRiMP/2.2.2 | (D) |
| EEGLAB/13.5.4 MPICH/3.0.4 | SHRiMP/2.2.3 | ||
| EEGLAB/14.1.1b (D) MPICH/3.2 | (D) SMRTSV2/2.0.0 | ||
| EIGENSOFT/6.0.1 mricrogl/20 | 180412 | SNAP/1.0beta.18 | |
| EIGENSOFT/6.1.4 (D) mricrogl/20 | 190904 | (D) SNP2HLA/v1.0 | |
| ExpansionHunter/v2.5.5 MRICRON/lx6 | 4 | SNP2HLA/v1.0.3 | (D) |
| FastX/0.0.14 MRtrix3/0.3 | 0.15 | SNPTEST/2.4.1 | |
| FCGENE/1.0.7 MRtrix3/3.0 | _RC2 | SNPTEST/2.5.0_BETA | |
| FQTOOLS/20190913 MRtrix3/201 | 61012 | (D) SNPTEST/2.5.1 | |
| FreeBayes/v0.9.21-19-gc003c1e Mutpred/2.0 | SNPTEST/2.5.2 | ||
| FreeBayes/v1.1.0-3-g961e5f3 (D) Mx/1.52b | SNPTEST/2.5.4-beta3 | (D) | |
| Freesurfer/5.2.0 NEURON/7.4_ | openmpi-3.1.3 | _nogui SPM/8 | |
| Freesurfer/6.0.0 (D) NEURON/7.4_ | openmpi-3.1.3 | SPM/12 | (D) |
| FSL/5.0.9-centos7_64 NEURON/7.7_ | openmpi-3.1.3 | _nogui SRATOOLKIT/2.9.6 | |
| FSL/5.0.9 NEURON/7.7_ | openmpi-3.1.3 | (D) STAR/2.7.2c | |
| FSL/5.0.11-centos7_64 nhettige/bo | wtie2 | STIR/STIR_V3.0 | |
| FSL/6.0.3-centos7_64 nhettige/fa | stqc | Stringtie/1.3.4c | |
| FSL/6.0.4-centos7_64 (D) nhettige/fl | exbar | SVS/1.0 | |
| GATE/V7.0 nhettige/gm | ap | SVS/8.3.1 | |
| GATK/3.3-0 nhettige/ST | AR | (D) SVS/8.3.2 | |
| GATK/3.5 Octave/3.4. | 3 | SVS/8.4.4 | (D) |
| GATK/3.7 (D) OpenMPI/1.4 | 0.1 | TABIX/0.1.4 | |
| GCTA/1.11 OPENMPI/1.6 | 0.4 | TABIX/0.2.3 | (D) |
| GCTA/1.21 OPENMPI/1.1 | 0.7 | Tensorflow/1.1.0_cpu | |
| GCTA/1.26 OPENMPI/3.1 | 0.3 | (D) Tensorflow/1.1.0_gpu | |
| GCTA/1.91.3beta (D) PALM/alpha1 | 10 | Tensorflow/Python-2.7.13/1.2.1_cpu | |
| GENEHUNTER/1.3 PANDOC/1.17 | 0.2 | Tensorflow/Python-2.7.13/1.2.1_gpu | (D) |
| GHC/8.6.4 parallel/20 | 120422 | Tensorflow/Python-3.6.0/1.2.1_cpu | |
| GLIBC/2.18 parallel/20 | 160222 | Tensorflow/Python-3.6.0/1.2.1_gpu | (D) |
| GNU_PARALLEL/20120422 parallel/20 | 160822 | tools/Aspera-CLI/3.9.6.1467.159c5b1 | |
| GNU_PARALLEL/20160222 parallel/20 | 170122 | TOPHAT/2.1.1 | |
| GNU_PARALLEL/20160822 parallel/20 | 171222 | Trinculo/0.96 | |
| GNU_PARALLEL/20170122 parallel/20 | 180622 | (D) UCSC_Genotype/1.1.1 | |
| GNU_PARALLEL/20171222 PennCNV/1.0 | 0.3 | use.own | (D) |
| GNU_PARALLEL/20180622 (D) PennCNV/1.0 | 0.4 | (D) VCFTOOLS/0.1.10 | |
| GPU/caffe/caffe-1.0.0-rc3 Perl/5.10.1 | _gcc44 | VCFTOOLS/0.1.13 | |
| GPU/nvbio/1.1.00 PET-HRRT/PE | T-HRRT_V3.0 | VCFTOOLS/0.1.15 | |
| GPU/soap3_aligner/0.01beta PGDSpider/2 | .0.8.2 | VCFTOOLS/0.1.16 | (D) |
| GRANVIL/1.0.2 PGDSpider/2 | .1.1.0 | (D) Wkhtmltox/0.12.3 | |
| GRANVIL/2.1.1 (D) Picard/1.12 | 7 | Xpression/v_1 | |
| GTOOL/v0.7.5 Picard/2.90 | (D) ZLIB/1.2.8 | ||
| Hadoop/HadoopBAM/7.1.0 PLINK/1.07- | x86_64 | ||
| Hadoop/HadoopBAM/7.9.0 (D) PLINK/1.9b_ | 6.15-x86_64 | (D) | |
| -------------------------------------------------------- | ------------ | /usr/local/scc/modulefiles/other ------------------------------------- | ------------------------------- |
| conda conda2 EasyBuild/4.4.2 EasyBuild/4.5.4 | (D) lmod | (D) SCC (L) use.own |