Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

genotype/

Description: Genomic variant data.

  • readme.txt: Details on preprocessing and analysis. 
  • Subfolders:

    • raw/: Original genotype data (in VCF file format).

    • processed/: Filtered genotype data.



raw/ OPTIMUM

OPTIMUM_CT_TOPMed_R3_chr1.vcf 

OPTIMUM

   OPTIMUM_CT_TOPMed_R3_chr1.nosex

OPTIMUM_CT_TOPMed_R3_chr2.

vcf

vcf     OPTIMUM_CT_TOPMed_R3_chr2.nosex

OPTIMUM_CT_TOPMed_R3_

chr10

chr3.

vcf

vcf   

OPTIMUM

 OPTIMUM_CT_TOPMed_R3_

chr10

chr3.nosex

OPTIMUM_CT_TOPMed_R3_

chr3

chr4.

vcf

vcf   

OPTIMUM

 OPTIMUM_CT_TOPMed_R3_

chr3

chr4.nosex

OPTIMUM_CT_TOPMed_R3_

chr18

chr5.

vcf

vcf   

OPTIMUM

 OPTIMUM_CT_TOPMed_R3_

chr18

chr5.nosex

OPTIMUM_CT_TOPMed_R3_

chr11

chr6.

vcf

vcf   

OPTIMUM

 OPTIMUM_CT_TOPMed_R3_

chr11

chr6.nosex

OPTIMUM_CT_TOPMed_R3_

chr4

chr7.

vcf

vcf   

OPTIMUM

 OPTIMUM_CT_TOPMed_R3_

chr4

chr7.nosex

OPTIMUM_CT_TOPMed_R3_

chr19

chr10.vcf  

 OPTIMUM

OPTIMUM_CT_TOPMed_R3_

chr19

chr10.nosex

OPTIMUM_CT_TOPMed_R3_

chr12

chr11.vcf

 OPTIMUM

  OPTIMUM_CT_TOPMed_R3_

chr12

chr11.nosex

OPTIMUM_CT_TOPMed_R3_

chr5

chr19.vcf  

OPTIMUM

 OPTIMUM_CT_TOPMed_R3_

chr5

chr19.nosex

OPTIMUM_CT_TOPMed_R3_

chr6.nosexOPTIMUM_CT_TOPMed_R3_chr13

chr12.vcf

OPTIMUM

 OPTIMUM_CT_TOPMed_R3_

chr20

chr12.nosex

OPTIMUM_CT_TOPMed_R3_

chr6

chr13.vcf

OPTIMUM

   OPTIMUM_CT_TOPMed_R3_

chr14

chr13.nosex


OPTIMUM_CT_TOPMed_R3_chr20.vcf

  OPTIMUM_CT_TOPMed_R3_

chr7

chr20.nosex

OPTIMUM_CT_TOPMed_R3_chr14.vcf

  OPTIMUM_CT_TOPMed_R3_

chr21

chr14.nosex

OPTIMUM_CT_TOPMed_R3_

chr7.vcf OPTIMUM_CT_TOPMed_R3_chr13.

chr21.nosex



OPTIMUM_CT_TOPMed_R3_chr15.nosex

OPTIMUM_CT_TOPMed_R3_chr21.vcf

OPTIMUM_CT_TOPMed_R3_chr8.nosex

OPTIMUM_CT_TOPMed_R3_chr15.vcf

OPTIMUM_CT_TOPMed_R3_chr22.nosex

OPTIMUM_CT_TOPMed_R3_chr8.vcf

OPTIMUM_CT_TOPMed_R3_chr16.nosex

OPTIMUM_CT_TOPMed_R3_chr22.vcf

OPTIMUM_CT_TOPMed_R3_chr9.nosex

OPTIMUM_CT_TOPMed_R3_chr16.vcf

OPTIMUM_CT_TOPMed_R3_chr17.vcf 

OPTIMUM_CT_TOPMed_R3_chr9.vcf

OPTIMUM_CT_TOPMed_R3_chr17.nosex

OPTIMUM_CT_TOPMed_R3_chr18.vcf   OPTIMUM_CT_TOPMed_R3_chr18.nosex