While LabKey has several locations in which viewing Participants and Specimen Sample data may be available, everything is available in one location within the Clinical and Assay Data tab.
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- Data Views (always available): the main area that contains a list of all datasets, custom queries, and results tables from the Biobank are found here. They may be organized into sub-categories.
- File Managers (custom availability): this area contains files associated to the study, produced generally by the Biobank. They may have distinct names to further indicate the types of data available.Link Assay (custom availability): this area is used specifically by the Biobank and should not be used by other project members.
Data Views
The Data Views section contains the list of datasets (Participants and custom datasets), Specimen Sample grid views (generally broken down by derivative type), and results from assay/instruments as uploaded by the Biobank. Often, sub-categories are created by the LabKey Administrator to help organize the data views. The following screenshot shows a typical Data View section.
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All Genotyping Results is a custom query provided to project users of LabKey to organize all genotyping results into a single, pivoted table.Sample Inventory is a custom dataset provided by the Biobank that indicates the latest storage information of each specimen/sample. These can also be viewed in the Specimen-specific views, such as DNA, RNA, Plasma, and Buffy.
Nanodrop, QubitBR, ViiA7, and Microarray reports show the results of the indicated instrument runs in tabular format. Other types of instrument/assay reports may be available, depending on the project requirements.
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