Krembil Centre for Neuroinformatics Summer School
Solving Problems in Mental Health using Multi-Scale Computational Neuroscience
Distribution Date: June 2022
Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health
Click Here to Browse and Register for our Question and Answer SessionsJoin us for the Krembil Centre For Neuroinformatics Open House!
The Krembil Centre for Neuroinformatics is excited to host its Annual Open House on Friday, June 24 starting at 10am.
Come meet the KCNI team and learn about the latest developments virtually, or even better, in person!Topic | Instructor | Video | Slides | ||||||
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A Multiscale Approach to Brain Disorders |
| Watch on CrowdcastYouTube (1:09:33) | slides | ||||||
Problems and opportunities in the diagnosis and treatment of major depression |
| Watch on CrowdcastYouTube (1:29:28) | slides |
Topic | Tutorial Videos / Online Tutorials | Prerequisit to | |
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R | R Workshop Material (Apr-Jun 2022) |
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Python | Introduction to Python |
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Git/Github | Introduction to Git and GitLab | ||
Linux/Bash | Introduction to Linux and Bash (Youtube) |
many recordings available via from last falls series. 2021 Fall - SCWG Workshop Recordings - Nov 2021 Series
2022 Watch Party Time(EST) | Session | Video | Materials | |||||||
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9:30-11:00am | Workshop 1: Guiding principles for FAIR and open science -Erin Dickie, Sejal Patel
| Watch on Youtube | slides | 11:00-12:30pm | ||||||
Workshop 2: Tools for Reproducible Science -Erin Dickie, Sejal Patel
| Watch on YouTube |
2022 Watch Party Time EST | Topic | Video | Materials | ||||||
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Lecture 1: Introduction to AI Ethics -Daniel Buchman | Watch on YouTube (1:22:07) | slides | 10:30-12:00pm|||||||
Lecture 2: Fairness and Health Equity -Marta Maslej &Laura Sikstrom | Watch on Youtube (1:06:36) | slides | 12:30-2:00pm | ||||||
Workshop 1: Research Design, Data Collection, Model Construction and Validation -Part 2: Intersectional Bias AssessmentMarta Maslej & Laura Sikstrom | Watch onCrowdcast | code (githubYoutube (52:27) | 2:00-3:30pm | Workshop 2: Analysis, Interpretation and Knowledge Exchange and/or Translation -Marta Maslej & Laura Sikstrom | Watch on Crowdcast |
All videos previously recorded July 6th, 2021 as part of the KCNI Summer School
Watch Party
Time (ESTSession | Instructor | Video | Materials | |
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Lecture 1: Digital Health for Mental health | Abhi Pratap | Watch on Crowdcast | Youtube (1:20:28) | 11:00-12:30pm |
Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflow | Abhi Pratap | YouTube (1:15:12) | Watch on Crowdcast |
The workshop demostates how to work with the Synapse platform.
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Workshop 1 will use push and pull data to the synapse platform for sharing biomedical datasets using the
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Watch Party Time (EST) | Session | Instructor | Video | Materials | ||
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June 21, 1pm | Lecture 1: Basics of genotype, central dogma, GWAS, and polygenic risk scores | Dan Felsky | Watch on Crowdcast | YouTube (1:28:17) | own time | |
Workshop 1: Managing genotype data using PLINK | Dan FelskyWatch on Crowdcast | YouTube (1:27:18) | code (GitHub) | |||
June 22, 9am | Workshop 2: Calculation of polygenic risk scores in PRSice | Dan Felsky | Watch on CrowdcastYouTube (1:53:34) | code (GitHub) | June 22, 11:30am (Live! - register here) | Genome-wide association analysis for admixed populations |
Considering population stratification and admixture in modern GWAS; concepts and tools | Dan Felsky | Register for the live webinar | Dan Felsky |
All videos previously recorded July July 7th, 2021 as part of the KCNI Summer School
Session | Instructor | Video | Materials | |||
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June 21, 2:30pm | Lecture 1: Transcriptomics at the single-cell and bulk level level | Shreejoy Tripathy | Watch on Crowdcast | slides | YouTube (1:29:08) | slidesJune 22, 12:30pm |
Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | Shreejoy Tripathy | Sonny Chen | YouTube (1:19:17)Watch on Crowdcast | June 22, 2:00-3:30pm | ||
Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data | Shreejoy Tripathy | Keon Arbabi | YouTube (1:15:14)Watch on Crowdcast |
All videos previously recorded July 7th, 2021 as part of the KCNI Summer School
TA's: Keon Arbabi, Sonny Chen, Micaela Consens, Amin Kharaghani
Watch Party Time (EST)June 23, 2022 | Session | Instructors | Video | Materials | |
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Lecture 1: Simulating brain microcircuit activity in mental health | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:20:43) | slides | ||
10:30-12:00pm | Lecture 2: Simulating EEG from brain microcircuits in mental health | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:11:04) | slides | |
12:30-2:00pm | Workshop 1: Simulating and analyzing spiking from neurons and microcircuits | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:39:51) | 2:00-3:30pm | |
Workshop 2: Simulating and analyzing EEG signals from brain microcircuits | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:30:41) |
All videos previously recorded July 8th, 2021 as part of the KCNI Summer School
Watch Party Time (EST)
June 29, 2022Session | Instructors | Video | Materials | |
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Lecture 1: Introduction to neuroimaging connectomics | Erin Dickie & John GriffithsWatch on Crowdcast | YouTube (1:47:22) | slides | |
10:00-11:30am | Workshop 1: Calculating Neuroimaging Connectomes | Erin Dickie & John GriffithsWatch on Crowdcast | YouTube (1:39:04) |
Watch Party Time (EST)
June 30, 2022Session | Instructors | Video | Materials | ||
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12:30-2:00pm | Lecture 2: Intro to whole-brain modelling (Lecture) | John Griffiths | Watch on Crowdcast | 2:00-3:30pmYouTube (1:24:44) | |
Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation | John GriffithsWatch on Crowdcast | YouTube (1:16:10) |
All videos previously recorded July 9th, 2021 as part of the KCNI Summer School
Watch Party Time (EST)
June 28, 2022Session | Instructor | Video | Materials |
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Lecture 1: |
Modelling Cognition using Bayesian Inference | Andreea Diaconescu |
YouTube (1:28:14) | slides |
Turorial 1: Hierarchical Gaussian Filter and Simulating Learners
Workshop 1: Modelling Abnormal Beliefs | Daniel Hauke | YouTube (1:15:04) |
code (github) |
Lecture 2: |
Integration of Neuroimaging: Dynamic Causal Modelling for fMRI and EEG Data | Andreea Diaconescu |
, Colleen Charlton | YouTube (1:32:42) |
Tutorial 2: Single-trial EEG Modelling
Watch on Crowdcast
slides | |
Workshop 2: |
Dynamic Causal Modelling for fMRI: Extensions and Simulations | Peter Bedford, Povilas Karvelis | YouTube (1:22:21) |
code (github) |
All videos previously recorded July 12th, 2021 as part of the KCNI Summer School
TA's: Colleen Charlton, Daniel Hauke, Peter Bedford, Povilas Karvelis
Session | Instructor | Video | Materials | |
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Lecture 1: Population-based resources and the BrainHealth Databank | Joanna Yu | Watch on CrowdcastYouTube | slides | |
Workshop 1: Introduction to interactive methods | Daniel FelskyWatch on Crowdcast | YouTube (1:24:30) | ||
Lecture 2: Types of integrative research and Whole Person Modelling | Daniel Felsky | Watch on CrowdcastYouTube (1:28:14) | ||
Workshop 2: SNF / Subtyping | Daniel Felsky | Watch on CrowdcastYouTube (1:21:38) |