Krembil Centre for Neuroinformatics Summer School
Solving Problems in Mental Health using Multi-Scale Computational Neuroscience
Distribution Date: June 2022
Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health
Topic | Instructor | Video | Slides | ||||||
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A Multiscale Approach to Brain Disorders |
| Watch on CrowdcastYouTube (1:09:33) | slides | ||||||
Problems and opportunities in the diagnosis and treatment of major depression |
| Watch on CrowdcastYouTube (1:29:28) | slides |
Topic | Tutorial Videos | Online/ Online Tutorials | Prerequisit to | ||
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R | R Workshop Material (Apr-Jun 2022) |
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Python | Introduction to Python |
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Git/Github | Introduction to Git and GitLab | ||||
Linux/Bash | Introduction to Linux and Bash (Youtube) |
many recordings available via from last falls series. 2021 Fall - SCWG Workshop Recordings
2022 Watch Party Time
(EST)Session | InstructorsVideo | Materials | ||||||||
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Workshop 1: Guiding principles for FAIR and open science -Erin Dickie, Sejal Patel
| Watch onCrowdcastYoutube | slides | 11:00-12:30pm | |||||||
Workshop 2: | Tools Tools for Reproducible Science -Erin Dickie, Sejal Patel
| Watch on YouTubeWatch on Crowdcast |
Topic | InstructorVideo | Materials | |||||||
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Lecture 1: | Introduction Introduction to AI Ethics -Daniel Buchman | Watch onCrowdcast | 10:30-12:00pmYouTube (1:22:07) | slides | |||||
Lecture 2: Fairness and Health Equity - | Marta Maslej & Laura Sikstrom | Watch onCrowdcastYoutube (1:06:36) | slides | 12:30-2:00pm||||||
Workshop 1: Research Design, Data Collection, Model Construction and Validation -Part 2: Intersectional Bias AssessmentMarta Maslej & Laura Sikstrom | Watch onCrowdcast | code (githubYoutube (52:27) | 2:00-3:30pm | Workshop 2: Analysis, Interpretation and Knowledge Exchange and/or Translation | Marta Maslej & Laura Sikstrom | Watch on Crowdcast |
All videos previously recorded July 6th, 2021 as part of the KCNI Summer School
Session | Instructor | Video | Materials |
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Lecture 1: Digital Health for Mental health | Abhi Pratap | Youtube (1:20:28) | Watch on Crowdcast |
Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflowWatch on Crowdcast | Abhi Pratap | YouTube (1:15:12) |
The workshop demostates how to work with the Synapse platform.
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Workshop 1 will use push and pull data to the synapse platform for sharing biomedical datasets using the
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Session | Instructor | Video | Materials | ||
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Lecture 1: Basics of genotype, central dogma, GWAS, and polygenic risk scores | Dan FelskyWatch on Crowdcast | YouTube (1:28:17) | |||
Workshop 1:Intro to transcriptomic data types, including single-cell and bulk RNAseq | Dan Felsky | Managing genotype data using PLINK | Dan Felsky | YouTube (1:27:18) | code (GitHub) |
Workshop 2: Calculation of polygenic risk scores in PRSice | Dan Felsky | YouTube (1:53:34) | code (GitHub) | ||
Considering population stratification and admixture in modern GWAS; concepts and tools | Dan Felsky | Register for the live webinar | Watch on Crowdcast |
All videos previously recorded July July 7th, 2021 as part of the KCNI Summer School
Session | Instructor | Video | Materials | ||
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Lecture 1: Transcriptomics at the single-cell and bulk level level | Shreejoy Tripathy | YouTube (1:29:08) | slidesWatch on Crowdcast | ||
Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | Dan Felsky | Sonny Chen | YouTube (1:19:17) | Watch on Crowdcast | |
Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data | Dan Felsky | Keon Arbabi | YouTube (1:15:14) | Watch on Crowdcast |
All videos previously recorded July 7th, 2021 as part of the KCNI Summer School
TA's: Keon Arbabi, Sonny Chen, Micaela Consens, Amin Kharaghani
Session | Instructors | Video | Materials |
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Lecture 1: Simulating brain microcircuit activity in mental health | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:20:43) | slides |
Lecture 2: Simulating EEG from brain microcircuits in mental health | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:11:04) | slides |
Workshop 1: Simulating and analyzing spiking from neurons and microcircuits | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:39:51) | |
Workshop 2: Simulating and analyzing EEG signals from brain microcircuits | Etay Hay & Frank MazzaWatch on Crowdcast | YouTube (1:30:41) |
All videos previously recorded July 8th, 2021 as part of the KCNI Summer School
Session | Instructors | Video | Materials |
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Lecture 1: Introduction to neuroimaging connectomics | Erin Dickie & John GriffithsWatch on Crowdcast | YouTube (1:47:22) | slides |
Workshop 1: Calculating Neuroimaging Connectomes | Erin Dickie & John GriffithsWatch on Crowdcast | YouTube (1:39:04) |
Session | Instructors | Video | Materials |
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Lecture 2: Intro to whole-brain modelling (Lecture) | John GriffithsWatch on Crowdcast | YouTube (1:24:44) | |
Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation | John GriffithsWatch on Crowdcast | YouTube (1:16:10) |
All videos previously recorded July 9th, 2021 as part of the KCNI Summer School
Time (EST)
Session | Instructor | Video | Materials |
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Lecture 1: |
Modelling Cognition using Bayesian Inference | Andreea Diaconescu |
YouTube (1:28:14) | slides |
Workshop 1: |
Modelling Abnormal Beliefs | Daniel Hauke | YouTube (1:15:04) |
code (github) | |
Lecture 2 |
: Integration of Neuroimaging: Dynamic Causal Modelling for fMRI and EEG Data | Andreea Diaconescu |
, Colleen Charlton | YouTube (1:32:42) |
slides |
Workshop 2: |
Dynamic Causal Modelling for fMRI: Extensions and Simulations | Peter Bedford, Povilas Karvelis | YouTube (1:22:21) |
code (github) |
All videos previously recorded July 12th, 2021 as part of the KCNI Summer School
TA's: Colleen Charlton, Daniel Hauke, Peter Bedford, Povilas Karvelis
Session | Instructor | Video | Materials | ||
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Lecture 1: Population-based resources and the BrainHealth Databank | Joanna Yu | YouTube | slidesWatch on Crowdcast | ||
Workshop 1: Introduction to interactive methods | Daniel FelskyWatch on Crowdcast | YouTube (1:24:30) | |||
Lecture 2: Types of integrative research and Whole Person Modelling | Daniel Felsky | Watch on CrowdcastYouTube (1:28:14) | |||
Workshop 2: SNF / Subtyping | Daniel Felsky | Watch on CrowdcastYouTube (1:21:38) |