Fundamental Methods for Genomic Analysis
Instructor: Dan Felsky
Time (EST) | Session |
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9:00-10:30 | Lecture 1: Basics of genotype, central dogma, GWAS, and polygenic risk scores | |
1:00-2:30pm | Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | |
All videos previously recorded July 7th, 2021 as part of the KCNI Summer School
Fundamental Methods for Single-Cell Transcriptome Analysis (July 7, 2021)
Instructors: Shreejoy Tripathy & Dan Felsky
TA's: Keon Arbabi, Sonny Chen, Micaela Consens, Amin Kharaghani
Recorded on July 7, 2021 as a part of the Centre for Addiction and Mental Health’s Krembil Centre for Neuroinformatics (KCNI) Summer School, (CAMH KCNI SS)
Time (EST) | Session |
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10:45-12:15 | Lecture 1: Transcriptomics at the single-cell and bulk level level | |
1:00-2:30pm | Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | |
2:45-4:15pm | Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data | |
All videos previously recorded July 7th, 2021 as part of the KCNI Summer School
Simulating Brain Microcircuit Activity and Signals in Mental Health
Instructors: Etay Hay & Frank Mazza
Watch Party Time (EST) | Session |
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9:00-10:30 | Lecture 1: Simulating brain microcircuit activity in mental health | |
10:45-12:15 | Lecture 2: Simulating EEG from brain microcircuits in mental health | |
1:00-2:30pm | Workshop 1: Simulating and analyzing spiking from neurons and microcircuits | |
2:45-4:15pm | Workshop 2: Simulating and analyzing EEG signals from brain microcircuits | |
All videos previously recorded July 8th, 2021 as part of the KCNI Summer School
Day 5: Whole-Brain Modelling and Neuroimaging Connectomics (July 9, 2021)
Instructors: Erin Dickie & John Griffiths
TA's: Shreyas Harita, Jerrold Jeyachandra, Kevin Kadak
Time (EST) | Session |
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9:00-10:30 | Lecture 1: Introduction to neuroimaging connectomics | |
10:45-12:15 | Workshop 1: Calculating Neuroimaging Connectomes | |
1:00-2:30pm | Lecture 2: Intro to whole-brain modelling (Lecture) | |
2:45-4:15pm | Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation | |
Day 6: Bayesian Models of Learning and Integration of Neuroimaging Data (July 12, 2021)
Instructors: Andreea Diaconescu
TA's: Colleen Charlton, Daniel Hauke, Peter Bedford, Povilas Karvelis
Time (EST) | Session |
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9:00-10:30 | Lecture 1: Bayesian Models of Learning | |
10:45-12:15 | Turorial 1: Hierarchical Gaussian Filter and Simulating Learners | |
1:00-2:30pm | Lecture 2: Computational Modelling of EEG Data | |
2:45-4:15pm | Tutorial 2: Single-trial EEG Modelling | |
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| Digital Health |
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| Digital Health |
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Digital Health and Population-Based Data Resources (July 13, 2021)
Instructors: Daniel Felsky, Abhi Pratap & Joanna Yu
TA's: Mohamed Abdelhack, Grace Jacobs, Amin Kharaghani, Marta Maslej, Milos Milic, Earvin Tio
Time (EST) | Session |
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9:00-10:30 | Expand |
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| Presented by Abhi Pratap |
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10:45-12:15 | Lecture 2: Population-based resources and the BrainHealth Databank | |
1:00-2:30pm | Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflow | |
2:45-4:15pm | Workshop 2: Introduction to interactive methods | |
Integrative Research Methods and Final Panel Discussion (July 14, 2021)
Instructors: Daniel Felsky & Abhi Pratap + All Instructor Panel
TA's: Mohamed Abdelhack, Amin Kharaghani, Marta Maslej, Milos Milic, Earvin Tio
Time (EST) | Session |
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| Lecture 2: Population-based resources and the BrainHealth Databank |
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| Workshop 2: Introduction to interactive methods |
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9:00-10:30 | Lecture 1: Types of integrative research and Whole Person Modelling | |
10:45-12:15 | Workshop: SNF / Subtyping | |
1:00-2:30pm |
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2:45-4:15pm |
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Additional Lecture Content (no zoom Q&A event)
"A Multiscale Approach to Brain Disorders” - presented by Sean Hill,
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Presented by: Sean Hill, Ph.D. Director, Krembil Centre for Neuroinformatics Senior Scientist, Centre for Addiction and Mental Health Professor, Departments of Psychiatry and Physiology, University of Toronto, Canada Titular Professor, École Polytechnique Fédérale de Lausanne, Switzerland krembilneuroinformatics.ca Recorded on July 5, 2021 as a part of the Centre for Addiction and Mental Health’s Krembil Centre for Neuroinformatics (KCNI) Summer School, (CAMH KCNI SS) Slides available from: https://github.com/krembilneuroinformatics/kcni-school-lessons/blob/8ef714f18125ff7f905ef61c97a995bc18e705a2/day1/KCNISS_day1_1_Hill-compressed.pdf KCNI Summer School schedule and materials at: https://github.com/krembilneuroinformatics/kcni-school-lessons © Centre for Addiction and Mental Health, all rights reserved. |
Lecture: “A Multiscale Approach to Brain Disorders”
Presented by: Sean Hill, Ph.D. Director, Krembil Centre for Neuroinformatics Senior Scientist, Centre for Addiction and Mental Health Professor, Departments of Psychiatry and Physiology, University of Toronto, Canada Titular Professor, École Polytechnique Fédérale de Lausanne, Switzerland krembilneuroinformatics.ca
Recorded on July 5, 2021 as a part of the Centre for Addiction and Mental Health’s Krembil Centre for Neuroinformatics (KCNI) Summer School, (CAMH KCNI SS)
Slides available from: https://github.com/krembilneuroinformatics/kcni-school-lessons/blob/8ef714f18125ff7f905ef61c97a995bc18e705a2/day1/KCNISS_day1_1_Hill-compressed.pdf
KCNI Summer School schedule and materials at: https://github.com/krembilneuroinformatics/kcni-school-lessons
© Centre for Addiction and Mental Health, all rights reserved.
Problems and opportunities in the diagnosis and treatment of major depression. Speakers: Victor Tang, Brett Jones, Recorded July 5, 2021