Krembil Centre for Neuroinformatics Summer School
Solving Problems in Mental Health using Multi-Scale Computational Neuroscience
Distribution Date: June 2022
Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health
Table of Contents maxLevel 4 minLevel 2
Topic | Instructor | Video | Slides | ||||||
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A Multiscale Approach to Brain Disorders |
| Watch on Crowdcast | slides | ||||||
Problems and opportunities in the diagnosis and treatment of major depression |
| Watch on Crowdcast | slides |
Topic | Tutorial Videos | Online/ Online Tutorials | Prerequisit to | ||
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R | (see recording within tutorials page) | R Workshop Material (Apr-Jun 2022) | |||
Python | Introduction to Python | Those working with imaging data | |||
Git/Github | Introduction to Git and GitLab | ||||
Linux/Bash | Youtube | Introduction to Linux and Bash (Youtube) |
many recordings available via from last falls series. SCWG Workshop Recordings - Nov 2021 Series
2022 Watch Party Time(EST) | Session | InstructorsVideo | Materials | ||||||||||||||
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9:30-11:00am | Workshop 1: Guiding principles for FAIR and open science -Erin Dickie, Sejal Patel
| Watch on Crowdcast | slides | ||||||||||||||
11:00-12:30pm | Workshop 2: Tools for Reproducible Science -Erin Dickie, Sejal Patel
| Erin Dickie, Sejal Patel | Watch on Crowdcast | slides | 11:00-12:30pm | Workshop 2: Tools for Reproducible Science | Erin Dickie, Sejal PatelWatch on Crowdcast |
2022 Watch Party Time EST | Topic | InstructorVideo | Materials | |||
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9:00-10:30am | Lecture 1: | Introduction Introduction to AI Ethics -Daniel Buchman | Watch on Crowdcast | |||
10:30-12:00pm | Lecture 2: Fairness and Health Equity -Marta Maslej & Laura Sikstrom | Watch on Crowdcast | slides | |||
12:30-2:00pm | Workshop 1: Research Design, Data Collection, Model Construction and Validation -Marta Maslej & Laura Sikstrom | Watch on Crowdcast | ||||
2:00-3:30pm | Workshop 2: | AnalysisAnalysis, Interpretation and Knowledge Exchange and/or Translation -Marta Maslej & Laura Sikstrom | Watch on Crowdcast |
All videos previously recorded July 6th, 2021 as part of the KCNI Summer School
Watch PartyTime (EST) | Session | Instructor | Video | Materials |
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9:30-11:00am | Lecture 1: Digital Health for Mental health | Abhi Pratap | Watch on Crowdcast | |
11:00-12:30pm | Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflow | Abhi Pratap | Watch on Crowdcast |
The workshop demostates how to work with the Synapse platform.
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Workshop 1 will use push and pull data to the synapse platform for sharing biomedical datasets using the
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Time (EST) | Session | Instructor | Video | Materials |
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Lecture 1: Basics of genotype, central dogma, GWAS, and polygenic risk scores | Dan Felsky | Watch on Crowdcast | ||
Workshop 1: Managing genotype data using PLINK | Dan Felsky | Watch on Crowdcast | code (GitHub) | |
Workshop 2: Calculation of polygenic risk scores in PRSice | Dan Felsky | Watch on Crowdcast | code (GitHub) |
All videos previously recorded July 7th, 2021 as part of the KCNI Summer School
Session | Instructor | Video | Materials | |
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Lecture 1: Transcriptomics at the single-cell and bulk level level | Shreejoy Tripathy | Watch on Crowdcast | slides | |
Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | Dan Felsky | Watch on Crowdcast | ||
Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data | Dan Felsky | Watch on Crowdcast |
All videos previously recorded July 7th, 2021 as part of the KCNI Summer School
TA's: Keon Arbabi, Sonny Chen, Micaela Consens, Amin Kharaghani
Watch Party Time (EST) | Session | Instructors | Video | Materials |
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Lecture 1: Simulating brain microcircuit activity in mental health | Etay Hay & Frank Mazza | Watch on Crowdcast | slides | |
Lecture 2: Simulating EEG from brain microcircuits in mental health | Etay Hay & Frank Mazza | Watch on Crowdcast | slides | |
Workshop 1: Simulating and analyzing spiking from neurons and microcircuits | Etay Hay & Frank Mazza | Watch on Crowdcast | ||
Workshop 2: Simulating and analyzing EEG signals from brain microcircuits | Etay Hay & Frank Mazza | Watch on Crowdcast |
All videos previously recorded July 8th, 2021 as part of the KCNI Summer School
Time (EST) | Session | Instructors | Video | Materials |
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Lecture 1: Introduction to neuroimaging connectomics | Erin Dickie & John Griffiths | Watch on Crowdcast | slides | |
Workshop 1: Calculating Neuroimaging Connectomes | Erin Dickie & John Griffiths | Watch on Crowdcast |
Time (EST) | Session | Instructors | Video | Materials |
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Lecture 2: Intro to whole-brain modelling (Lecture) | John Griffiths | Watch on Crowdcast | ||
Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation | John Griffiths | Watch on Crowdcast |
All videos previously recorded July 9th, 2021 as part of the KCNI Summer School
Time (EST) | Session | Instructor | Video | Materials |
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Lecture 1: Bayesian Models of Learning | Andreea Diaconescu | Watch on Crowdcast | slides | |
Turorial 1: Hierarchical Gaussian Filter and Simulating Learners | Andreea Diaconescu | Watch on Crowdcast | code (github) | |
Lecture 2: Computational Modelling of EEG Data | Andreea Diaconescu | Watch on Crowdcast | slides | |
Tutorial 2: Single-trial EEG Modelling | Andreea Diaconescu | Watch on Crowdcast | code (github) |
TA's: Colleen Charlton, Daniel Hauke, Peter Bedford, Povilas Karvelis
Session | Instructor | Video | Materials | |
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Lecture 1: Population-based resources and the BrainHealth Databank | Joanna Yu | Watch on Crowdcast | slides | |
Workshop 1: Introduction to interactive methods | Daniel Felsky | Watch on Crowdcast | ||
Lecture 2: Types of integrative research and Whole Person Modelling | Daniel Felsky | Watch on Crowdcast | ||
Workshop 2: SNF / Subtyping | Daniel Felsky | Watch on Crowdcast |