Biotype-assigned Augmentation Approach in Resistant (late-life) Depression (BAARD)
Directory Structure on SCC
Path: /external/rprshnas01/netdata_kcni/dflab/data/BAARD
Description:
This directory contains data and documentation for the BAARD (Biotype-assigned Augmentation Approach in Resistant Depression) study. It is structured to organize raw, processed, and reference datasets across multiple data modalities, including clinical assessments, blood biomarkers, genotype data, neuroimaging, and neurocognitive assessments. Files are organized into subdirectories by data type to support analysis and collaboration.
clinical/
Description: Contains demographic, clinical, and symptom-related data collected from study participants.
Subfolders:
raw/
: Original clinical data files as collected.processed/
: Cleaned and standardized clinical datasets ready for analysis.readme.txt
: Detailed documentation on clinical variable definitions and data preprocessing steps.
mri/
Description: Includes structural, functional, and diffusion MRI data.
Subfolders:
raw/
: Unprocessed neuroimaging data in original formats.processed/
: Preprocessed MRI data (e.g., motion-corrected) suitable for analysis.readme.txt
: Information on scan protocols, file formats, and processing pipelines used.
neurocognitive/
Description: Contains results from standardized neuropsychological assessments.
Subfolders:
raw/
: Original scores and raw cognitive test data.processed/
: Cleaned and harmonized datasets for analysis.readme.txt
: Includes cognitive task descriptions and scoring methodology.
blood_biomarkers/
Description: Blood-based biological measures including inflammatory markers and other proteomic data.
Subfolders:
raw/
: Original laboratory data.processed/
: Quality-controlled and normalized biomarker data.readme.txt
: Details on sample processing, assay methods, and units of measurement.
genotype/
Description: Genomic variant data.
Subfolders:
raw/
: Original genotype data (in VCF file format).processed/
: Filtered genotype data with covariate information.readme.txt
: Details on preprocessing and analysis.
Dashboard Code Repository
An interactive dashboard used to support decision making in the development and evaluation of the BAARD tool.
Data Analysis Code Repository
All scripts and code utilized in the processing, harmonization, and analysis of multi-modal datasets for the BAARD project.
Data Modelling Code Repository
This repository contains scripts for implementing predictive modelling approaches for the BAARD project.
🔗 https://github.com/BAARD-CAMH/modelling