Krembil Centre for Neuroinformatics Summer School
Solving Problems in Mental Health using Multi-Scale Computational Neuroscience
Distribution Date: June 2022
Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health
Click Here to Browse and Register for our Question and Answer Sessions
Topic | Instructor | Video | Slides | |
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A Multiscale Approach to Brain Disorders | YouTube (1:09:33) | slides | ||
Problems and opportunities in the diagnosis and treatment of major depression | YouTube (1:29:28) | slides |
Topic | Tutorial Videos / Online Tutorials | Prerequisit to | |
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R | R Workshop Material (Apr-Jun 2022) |
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Python | Introduction to Python |
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Git/Github | Introduction to Git and GitLab | ||
Linux/Bash | Introduction to Linux and Bash (Youtube) |
many recordings available via from last falls series. SCWG Workshop Recordings - Nov 2021 Series
2022 Watch Party Time EST | Topic | Video | Materials | |
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9:00-10:30am | Lecture 1: Introduction to AI Ethics -Daniel Buchman | Watch on YouTube (1:22:07) | slides | |
10:30-12:00pm | Lecture 2: Fairness and Health Equity -Laura Sikstrom | Watch on Youtube (1:06:36) | slides | |
12:30-2:00pm | Workshop 1: Research Design, Data Collection, Model Construction and Validation -Marta Maslej & Laura Sikstrom | Watch on Crowdcast | ||
2:00-3:30pm | Workshop 2: Analysis, Interpretation and Knowledge Exchange and/or Translation -Marta Maslej & Laura Sikstrom | Watch on Crowdcast |
All videos previously recorded July 6th, 2021 as part of the KCNI Summer School
Watch PartyTime (EST) | Session | Instructor | Video | Materials |
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9:30-11:00am | Lecture 1: Digital Health for Mental health | Abhi Pratap | Youtube (1:20:28) | |
11:00-12:30pm | Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflow | Abhi Pratap | YouTube (1:15:12) |
The workshop demostates how to work with the Synapse platform.
Watch Party Time (EST) | Session | Instructor | Video | Materials |
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June 21, 1pm | Lecture 1: Basics of genotype, central dogma, GWAS, and polygenic risk scores | Dan Felsky | Watch on Crowdcast | |
own time | Workshop 1: Managing genotype data using PLINK | Dan Felsky | YouTube (1:27:18) | code (GitHub) |
June 22, 9am | Workshop 2: Calculation of polygenic risk scores in PRSice | Dan Felsky | YouTube (1:53:34) | code (GitHub) |
June 22, 11:30am (Live! - register here) | Genome-wide association analysis for admixed populations | Dan Felsky | Register for the live webinar |
All videos previously recorded July July 7th, 2021 as part of the KCNI Summer School
Watch Party Time (EST) | Session | Instructor | Video | Materials |
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June 21, 2:30pm | Lecture 1: Transcriptomics at the single-cell and bulk level level | Shreejoy Tripathy | Watch on Crowdcast | slides |
June 22, 12:30pm | Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | Shreejoy Tripathy | Watch on Crowdcast | |
June 22, 2:00-3:30pm | Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data | Shreejoy Tripathy | Watch on Crowdcast |
All videos previously recorded July 7th, 2021 as part of the KCNI Summer School
TA's: Keon Arbabi, Sonny Chen, Micaela Consens, Amin Kharaghani
Watch Party Time (EST)June 23, 2022 | Session | Instructors | Video | Materials |
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9:00-10:30am | Lecture 1: Simulating brain microcircuit activity in mental health | Etay Hay & Frank Mazza | Watch on Crowdcast | slides |
10:30-12:00pm | Lecture 2: Simulating EEG from brain microcircuits in mental health | Etay Hay & Frank Mazza | Watch on Crowdcast | slides |
12:30-2:00pm | Workshop 1: Simulating and analyzing spiking from neurons and microcircuits | Etay Hay & Frank Mazza | Watch on Crowdcast | |
2:00-3:30pm | Workshop 2: Simulating and analyzing EEG signals from brain microcircuits | Etay Hay & Frank Mazza | Watch on Crowdcast |
All videos previously recorded July 8th, 2021 as part of the KCNI Summer School
Watch Party Time (EST)June 29, 2022 | Session | Instructors | Video | Materials |
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8:30-10:00am | Lecture 1: Introduction to neuroimaging connectomics | Erin Dickie & John Griffiths | Watch on Crowdcast | slides |
10:00-11:30am | Workshop 1: Calculating Neuroimaging Connectomes | Erin Dickie & John Griffiths | Watch on Crowdcast |
Watch Party Time (EST)June 30, 2022 | Session | Instructors | Video | Materials |
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12:30-2:00pm | Lecture 2: Intro to whole-brain modelling (Lecture) | John Griffiths | Watch on Crowdcast | |
2:00-3:30pm | Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation | John Griffiths | Watch on Crowdcast |
All videos previously recorded July 9th, 2021 as part of the KCNI Summer School
Watch Party Time (EST)June 28, 2022 | Session | Instructor | Video | Materials |
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9:00-10:30am | Lecture 1: Bayesian Models of Learning | Andreea Diaconescu | Watch on Crowdcast | slides |
10:30-12:00pm | Turorial 1: Hierarchical Gaussian Filter and Simulating Learners | Andreea Diaconescu | Watch on Crowdcast | code (github) |
12:30-2:00pm | Lecture 2: Computational Modelling of EEG Data | Andreea Diaconescu | Watch on Crowdcast | slides |
2:00-3:30pm | Tutorial 2: Single-trial EEG Modelling | Andreea Diaconescu | Watch on Crowdcast | code (github) |
TA's: Colleen Charlton, Daniel Hauke, Peter Bedford, Povilas Karvelis
Session | Instructor | Video | Materials | |
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Lecture 1: Population-based resources and the BrainHealth Databank | Joanna Yu | Watch on Crowdcast | slides | |
Workshop 1: Introduction to interactive methods | Daniel Felsky | YouTube (1:24:30) | ||
Lecture 2: Types of integrative research and Whole Person Modelling | Daniel Felsky | YouTube (1:28:14) | ||
Workshop 2: SNF / Subtyping | Daniel Felsky | YouTube (1:21:38) |