Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

(warning) Using proper KCNI naming convention to label projects, participants, experiments, and files is extremely important as data is routed through the Neuroinformatics Platform according to these labels. Please take great case in ensuring data is properly labelled at every level, codes are consistent throughout the project life cycle and typos are avoided. Thank you!



Project ID


Include Page
Project ID
Project ID

Study Participant ID


Include Page
Subject ID
Subject ID

Biosample ID (Specimen Label)

Please ensure the BiosampleIDs are entered correctly at all data entry occurrences, as a misspelled labels can have significant consequences throughout the Neuroinformatics Platform system.

Biosample IDs will be created automatically for users entering specimens through the Specimen Entry form. They consist of the following parts:

Ex. ABC01_00000001_02_BED_01

ExampleDefinititionRestrictions/RulesNotes
ABCProject Code3 Uppercase LettersChosen in coordination with KCNI admin. Preferably a project acronym. Cannot match existing project.
01Study Code2 DigitsTypically '01', unless describing divisions within a project
00000001Participant Code4-8 Alphanumeric CharactersSee Participant Code Guidelines
02Visit Code2 DigitsIncrement each visit
BEDSpecimen Code3 Uppercase LettersSee Specimen Code List
01Vial (Aliquot) Number2 DigitsThe vial number of the specimen collection


The Visit Code is 2 integers that represent the visit number. For example, 01 is first baseline visit, 02 is a follow-up visit, etc..

The Specimen Code is the type of the specimen collected from the participant. This is a predefined list from the Biobank and Molecular Core Facility. See the Specimen Code list below.

The Modality Code is 2 integers that represent the vial number. For example, 01 would be first vial for specimen, 02 would be second vial for specimen, etc.


Specimen Codes 
Anchor
specimenCodes
specimenCodes


When entering specimens, ensure the correct specimen code is entered in the Specimen Entry form and included in the LabKey Biosample ID.


DescriptionSpecimen CodePrimary SpecimenAdditiveDerivative
Oragene saliva for DNAOSDSalivaOrageneDNADNA
Norgen saliva DNANSDSalivaNorgenDNADNA
Blood EDTA for DNABEDBlood (Whole)EDTADNA
Lymphoblasts for DNALBDLymphoblastN/ADNA
Buccal swabs for DNABSDBuccal swabN/ADNA
Fibroblasts for DNAFBDFibroblastN/ADNA
Oragene microbiome for DNAOMDStoolOrageneMicrobiomeDNA
Blood EDTA for Buffy for DNABBDBuffyEDTADNA
PAXgene for RNABPRBlood (Whole)PAXgeneRNA
Oragene saliva for RNAOSRSalivaOrageneRNARNA
Blood EDTA for plasmaBEPBlood (Whole)EDTAPlasma
Blood Citrate plasmaBCPBlood (Whole)CitratePlasma
Blood Heparin plasmaBHPBlood (Whole)HeparinPlasma
Blood for SerumBSRBlood (Whole)
Serum
PBMC CellsPBCPBMC
PBMC
PBMC Dry PelletPBPPBMC
PBMC
Culture SupernatantCLSCulture
Culture
Blood Citrate plasma Extracellular Vesicles (EV)BCEBlood (Whole)CitratePlasma EV
Blood Citrate plasma positive controlBCCBlood (Whole)CitratePlasma Positive Control
Ear Punch DNAEPDEar PunchN/ADNA