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Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health
Please register at:
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https://
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www.
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crowdcast.
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io/
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e/kcni-summer-school-2021
The full schedule:
Day 1: Welcome! Understanding
clinical research questions and reproducible scienceClinical Research Questions and Reproducible Science (July 5, 2021)
Day 2: Applied
ethicsEthics in
machine learning and mental healthMachine Learning and Mental Health (July 6, 2021)
Day 3: Fundamental
methodsMethods for
genomicGenomic and
single-cell transcriptome analysisSingle-Cell Transcriptome Analysis (July 7, 2021)
Day 4:
Brain microcircuit simulations of depressionSimulating Brain Microcircuit Activity and Signals in Mental Health (July 8, 2021)
Day 5: Whole-
brain modelling and neuroimaging connectomicsBrain Modelling and Neuroimaging Connectomics (July 9, 2021)
Day 6: Bayesian
modelsModels of
learningLearning and
integrationIntegration of
neuroimaging dataNeuroimaging Data (July 12, 2021)
Day 7: Digital
healthHealth and
population-based data resourcesPopulation-Based Data Resources (July 13, 2021)
Day 8: Integrative
research methodsResearch Methods and Final Panel Discussion (July 14, 2021)
Anchor Day1 Day1
Day 1: Welcome! Understanding
Day1 | |
Day1 |
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Clinical Research Questions and Reproducible Science (July 5, 2021)
Instructors: Erin Dickie, Sean Hill, Sejal Patel, Victor Tang, Brett Jones
TA's:
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Kevin Kadak, Taha Morshedzadeh, Kevin Witczak
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we will use our custom rstudio docker, available from dockerhub
edickie/kcnischool-rstudio:latest
click here for install instructions.Also grab Erin's reproducibility slides from here
Time (EST) | Session | |||||||
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9:00-10:30 | Lecture 1: Welcome and Orientation | Watch on Crowdcast | ||||||
10:30-10:45 | Morning Break | Join us in gather.town | 10:45-12:15 | Lecture 2: Problems and opportunities in the diagnosis and treatment of major depression | Watch on Crowdcast | 12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Workshop 1: Guiding principles for FAIR and open science | Watch on Crowdcast | ||||||
2:30-2:45pm | Afternoon Break | Join us in gather.town | 2:45-4:15pm | Workshop 2: Tools for Reproducible Science | Watch on Crowdcast | 4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town
Anchor Day2 Day2
Day 2: Applied
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Day2 |
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Ethics in
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Machine Learning and Mental Health (July 6, 2021)
Instructors: Daniel Buchman, Marta Maslej & Laura Sikstrom
Computing Environment:
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Time (EST) | Session | |||||||
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9:00-10:30 | Lecture 1: Introduction to AI Ethics | Watch on Crowdcast | ||||||
10:30-10:45 | Morning Break | Join us in gather.town | 10:45-12:15 | Lecture 2: Fairness and Health Equity | Watch on Crowdcast | |||
12:15pm-1:00pm | Lunch Break | Join us in gather.town | 1:00-2:30pm | Workshop 1: Research Design, Data Collection, Model Construction and Validation | Watch on Crowdcast | 2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: Analysis, Interpretation and Knowledge Exchange and/or Translation | Watch on Crowdcast | 4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town
Anchor Day3 Day3
Day 3: Fundamental
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Day3 |
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Methods for
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Genomic and
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Single-Cell Transcriptome Analysis (July 7, 2021)
Instructors: Shreejoy Tripathy & Dan Felsky
TA's:
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Keon Arbabi, Sonny Chen, Micaela Consens, Amin Kharaghani
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Time (EST) | Session | |||||||
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9:00-10:30 | Lecture 1: Basics ofGenotypegenotype,Centralcentral dogma, GWAS, andPolygenic Risk Scorespolygenic risk scores | Watch on Crowdcast | 10:30-10:45 | Morning Break | Join us in gather.town | |||
10:45-12:15 | Lecture 2: Transcriptomics at the single-cell and bulk level level | Watch on Crowdcast | ||||||
12:15pm-1:00pm | Lunch Break | Join us in gather.town | 1:00-2:30pm | Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | Watch on Crowdcast | 2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data | Watch on Crowdcast | 4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town
Anchor Day4 Day4
Day 4: Simulating Brain Microcircuit
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Day4 |
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Activity and Signals in Mental Health (July 8, 2021)
Instructors: Etay Hay & Frank Mazza
TA's TBA
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Time (EST) | Session | |||||||
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9:00-10:30 | Lecture 1:ModelingSimulating brainmicrocircuitsmicrocircuit activity in mental healthand depression | Watch on Crowdcast | ||||||
10:30-10:45 | Morning Break | Join us in gather.town | 10:45-12:15 | Lecture 2: Simulating EEG from brain microcircuits in mental healthand depression | Watch on Crowdcast | |||
12:15pm-1:00pm | Lunch Break | Join us in gather.town | 1:00-2:30pm | Workshop 1:simulating neurons, microcircuits and EEG signalsSimulating and analyzing spiking from neurons and microcircuits | Watch on Crowdcast | 2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2:exercisesSimulating and analyzing EEG signals from brain microcircuits | Watch on Crowdcast | 4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town
Anchor Day5 Day5
Day 5: Whole-Brain Modelling and Neuroimaging Connectomics (July 9, 2021)
Day5 | |
Day5 |
Instructors: Erin Dickie & John Griffiths
TA's: Shreyas Harita, Jerrold Jeyachandra, Kevin Kadak
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Time (EST) | Session | |||||||
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9:00-10:30 | Lecture 1: Introduction to neuroimaging connectomics | Watch on Crowdcast | ||||||
10:30-10:45 | Morning Break | Join us in gather.town | 10:45-12:15 | Workshop 1: Calculating Neuroimaging Connectomes | Watch on Crowdcast | 12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Lecture 2: Intro to whole-brain modelling (Lecture) | Watch on Crowdcast | ||||||
2:30-2:45pm | Afternoon Break | Join us in gather.town | 2:45-4:15pm | Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation | Watch on Crowdcast | 4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town
Anchor Day6 Day6
Day 6: Bayesian Models of Learning and Integration of Neuroimaging Data (July 12, 2021)
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Day6 |
Instructors: Andreea Diaconescu
TA's: Colleen Charlton, Daniel Hauke, Peter Bedford, Povilas Karvelis
Compute Environment: MATLAB.
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All students in the interactive stream should have been emailed a link to a temporary MATLAB license that can be used for this course. Contact KCNI.School@camh.ca with any questions.
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Time (EST) | Session | |||||||
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9:00-10:30 | Lecture 1: Bayesian Models of Learning | Watch on Crowdcast | 10:30-10:45 | Morning Break | Join us in gather.town | |||
10:45-12:15 | Turorial 1: Hierarchical Gaussian Filter and Simulating Learners | Watch on Crowdcast | ||||||
12:15pm-1:00pm | Lunch Break | Join us in gather.town | 1:00-2:30pm | Lecture 2: Computational Modelling of EEG Data | Watch on Crowdcast | 2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Tutorial 2: Single-trial EEG Modelling | Watch on Crowdcast | 4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town
Anchor Day7 Day7
Day 7: Digital Health and Population-Based Data Resources (July 13, 2021)
Day7 | |
Day7 |
Instructors: Daniel Felsky, Abhi Pratap & Joanna Yu
TA's: Mohamed Abdelhack, Grace Jacobs, Amin Kharaghani, Marta Maslej,
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Milos Milic, Earvin Tio
Time (EST) | Session | ||||||
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9:00-10:30 | Lecture 1: Digital Health for Mental health | Watch on Crowdcast | |||||
10:30-10:45 | Morning Break | Join us in gather.town | 10:45-12:15 | Lecture 2: Population-based resources and the BrainHealth Databank | Watch on Crowdcast12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflow | Watch on Crowdcast | |||||
2:30-2:45pm | Afternoon Break | Join us in gather.town | 2:45-4:15pm | Workshop 2: Introduction to interactive methods | Watch on Crowdcast | 4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town
Anchor Day8 Day8
Day 8: Integrative
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Day8 |
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Research Methods and Final Panel Discussion (July 14, 2021)
Instructors: Daniel Felsky & Abhi Pratap + All Instructor Panel
TA's: Mohamed Abdelhack, Amin Kharaghani, Marta Maslej
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, Milos Milic, Earvin Tio
Time (EST) | Session | |||||||
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9:00-10:30 | Lecture 1: Types of integrative research and Whole Person Modelling | Watch on Crowdcast10:30-10:45 | ||||||
Morning Break | Join us in gather.town | 10:45-12:15 | Workshop: SNF / Subtyping | Watch on Crowdcast | ||||
12:15pm-1:00pm | Lunch Break | Join us in gather.town | 1:00-2:30pm | Group Panel Discussion | Watch on Crowdcast | 2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Final Social Hour | Watch on Crowdcast | 4:30-5:00pm | Social Chat? / Q & A | Join us in gather.town |
2020 Summer School Overview
Overview
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