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Krembil Centre for Neuroinformatics Summer School
Solving problems in mental Health using multi-scale computational neuroscience
JULY 5-9th, 12-14th, 2021.
Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health
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Please register at: HTTPS://APP.CERTAIN.COM/PROFILE/3248659
The full schedule:
Day 1: Welcome! Understanding clinical research questions and reproducible science (July 5, 2021)
Day 2: Applied ethics in machine learning and mental health (July 6, 2021)
Day 3: Fundamental methods for genomic and single-cell transcriptome analysis (July 7, 2021)
Day 4: Brain microcircuit simulations of depression (July 8, 2021)
Day 5: Whole-brain modelling and neuroimaging connectomics (July 9, 2021)
Day 6: Bayesian models of learning and integration of neuroimaging data (July 12, 2021)
Day 7: Digital health and population-based data resources (July 13, 2021)
Day 8: Integrative research methods and Final Panel Discussion (July 14, 2021)
Day 1: Welcome! Understanding clinical research questions and reproducible science (July 5, 2021)
Instructors: Erin Dickie, Sean Hill, Victor Tang, Brett Jones
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Time (EST) | Session | |
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9:00-10:30 | Lecture 1: Welcome and Orientation | Watch on Crowdcast |
10:30-10:45 | Morning Break | Join us in gather.town |
10:45-12:15 | Lecture 2: Problems and opportunities in the diagnosis and treatment of major depression | Watch on Crowdcast |
12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Workshop 1: Guiding principles for FAIR and open science | Watch on Crowdcast |
2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: Tools for Reproducible Science | Watch on Crowdcast |
4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town |
Day 2: Applied ethics in machine learning and mental health (July 6, 2021)
Instructors: Daniel Buchman, Marta Maslej & Laura Sikstrom
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Time (EST) | Session | |
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9:00-10:30 | Lecture 1: Introduction to AI Ethics | Watch on Crowdcast |
10:30-10:45 | Morning Break | Join us in gather.town |
10:45-12:15 | Lecture 2: Fairness and Health Equity | Watch on Crowdcast |
12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Workshop 1: Research Design, Data Collection, Model Construction and Validation | Watch on Crowdcast |
2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: Analysis, Interpretation and Knowledge Exchange and/or Translation | Watch on Crowdcast |
4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town |
Day 3: Fundamental methods for genomic and single-cell transcriptome analysis (July 7, 2021)
Instructors: Shreejoy Tripathy & Dan Felsky
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Time (EST) | Session | |
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9:00-10:30 | Lecture 1: Basics of Genotype, Central dogma, GWAS, and Polygenic Risk Scores | Watch on Crowdcast |
10:30-10:45 | Morning Break | Join us in gather.town |
10:45-12:15 | Lecture 2: Transcriptomics at the single-cell and bulk level level | Watch on Crowdcast |
12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Workshop 1: Intro to transcriptomic data types, including single-cell and bulk RNAseq | Watch on Crowdcast |
2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: Explore cellular changes in major depression using bulk and single-cell RNAseq data | Watch on Crowdcast |
4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town |
Day 4: Brain Microcircuit Simulations of Depression (July 8, 2021)
Instructors: Etay Hay & Frank Mazza
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Time (EST) | Session | |
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9:00-10:30 | Lecture 1: Modeling brain microcircuits activity in health and depression | Watch on Crowdcast |
10:30-10:45 | Morning Break | Join us in gather.town |
10:45-12:15 | Lecture 2: Simulating EEG from brain microcircuits in health and depression | Watch on Crowdcast |
12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Workshop 1: simulating neurons, microcircuits and EEG signals | Watch on Crowdcast |
2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: exercises | Watch on Crowdcast |
4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town |
Day 5: Whole-Brain Modelling and Neuroimaging Connectomics (July 9, 2021)
Instructors: Erin Dickie & John Griffiths
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Time (EST) | Session | |
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9:00-10:30 | Lecture 1: Introduction to neuroimaging connectomics | Watch on Crowdcast |
10:30-10:45 | Morning Break | Join us in gather.town |
10:45-12:15 | Workshop 1: Calculating Neuroimaging Connectomes | Watch on Crowdcast |
12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Lecture 2: Intro to whole-brain modelling (Lecture) | Watch on Crowdcast |
2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: simulating whole-brain activity, EEG, evoked responses, brain stimulation | Watch on Crowdcast |
4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town |
Day 6: Bayesian Models of Learning and Integration of Neuroimaging Data (July 12, 2021)
Instructors: Andreea Diaconescu
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Time (EST) | Session | |
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9:00-10:30 | Lecture 1: Bayesian Models of Learning | Watch on Crowdcast |
10:30-10:45 | Morning Break | Join us in gather.town |
10:45-12:15 | Turorial 1: Hierarchical Gaussian Filter and Simulating Learners | Watch on Crowdcast |
12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Lecture 2: Computational Modelling of EEG Data | Watch on Crowdcast |
2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Tutorial 2: Single-trial EEG Modelling | Watch on Crowdcast |
4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town |
Day 7: Digital Health and Population-Based Data Resources (July 13, 2021)
Instructors: Daniel Felsky, Abhi Pratap & Joanna Yu
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Time (EST) | Session | |
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9:00-10:30 | Lecture 1: Digital Health for Mental health | Watch on Crowdcast |
10:30-10:45 | Morning Break | Join us in gather.town |
10:45-12:15 | Lecture 2: Population-based resources and the BrainHealth Databank | Watch on Crowdcast |
12:15pm-1:00pm | Lunch Break | Join us in gather.town |
1:00-2:30pm | Workshop 1: accessing reproducible datasets from Synapse as part of integrated workflow | Watch on Crowdcast |
2:30-2:45pm | Afternoon Break | Join us in gather.town |
2:45-4:15pm | Workshop 2: Introduction to interactive methods | Watch on Crowdcast |
4:30-5:00pm | Daily Social Chat? / Q & A | Join us in gather.town |
Day 8: Integrative research methods and Final Panel Discussion (July 14, 2021)
Instructors: Daniel Felsky & Abhi Pratap + All Instructor Panel
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