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Comment: updated information regarding upgrade changes

Here we outline the process for creating new participant records in LabKey. 

(warning)Note For managing participants in preclinical studies, please see the sub-page, Participants in Preclinical Studies.
(warning)Note Please remember that LabKey does not work with Internet Explorer. Please have Javascript enabled to access all features of Managing Participants.

Participants Tab Overview

The Participants tab is organized into two main parts:

  1. The ‘Enter Participant’ form: this area contains empty fields to enter new participant information
  2. The Participants grid view: this area shows the entire participant list for the study

Enter Participants Form

Individual participant entry is done through the Enter Participant form:

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  1. Participant ID: this field is required. This field allows for alphanumeric entries. It is recommended that new CAMH studies on-boarded through LabKey follow the KCNI and NIP formats for proper integration with other NIP platforms. A full guide for Participant IDs (LabKey Participant IDs) can be found here.
    1. It is recommended users name their Participant Codes numerically (starting at 00000001 and incrementing as necessary).
    2. Any Participant ID that does not following the NIP naming convention will be assigned a new Participant ID that conforms to the NIP naming convention. The non-NIP ID entered will be listed as the Study Participant ID. See the Edit Participants section for further details on Study Participant IDs. Both IDs will be stored in LabKey for cross-referencing purposes.
  2. Clinic: this field is required. Users will select the proper KCNI site code where the participants were recruited (for human participants) or collected (for animal participants) from a dropdown list. An external link to shows the full name and location of the three-letter site code for reference.
  3. Sex: this field is recommended as it can be used for quality control purposes in genetic studies. However, study teams must ensure they have REB approval to collect and share this information with research personnel involved in the collection and analysis of the samples. Users will select the proper sex designation as outlined in the CAMH patient intake form from a dropdown list. For participants where sex was not entered or is irrelevant for the study’s purpose, it is recommended to mark the field as Unknown/Prefer not to answer.

The following table indicates each possible entry field and their expected data types:

Field

Data Type

Comments

Participant ID

Alphanumeric (String)

Required field. Recommended standardized NIP format: PROJECT|STUDYCODE_SITECODE_PARTICIPANTCODE

Ex: TST01_CMH_00001000

Family ID

Integer

Option to autogenerate a family ID by selecting the checkbox next to the Family ID entry field. This field is mandatory for genetic (DNA/RNA) studies where the study team will be recruiting family members.

Individual ID

Integer

This field is mandatory for genetic (DNA/RNA) studies where the study team will be recruiting family members.

Mother ID

Integer

This field is mandatory for genetic (DNA/RNA) studies where the study team will be recruiting family members.

Father ID

Integer

This field is mandatory for genetic (DNA/RNA) studies where the study team will be recruiting family members.

Sex

Dropdown menu

Recommended field

Clinic

Dropdown menu

Required field

Date of Birth

DateTime

Can be entered manually, or by clicking the calendar icon and selecting the appropriate date. Expected format: MM/DD/YYYY

Relationship

Dropdown menu

This field is mandatory for genetic (DNA/RNA) studies where the study team will be recruiting family members.

Complete Trio

Dropdown menu

This field is mandatory for genetic (DNA/RNA) studies where the study team will be recruiting family members.

Comments

Multi-line textbox

Maximum space of 400 characters

There are two buttons at the bottom of the form:

  1. Submit will insert the new Participant entry directly into the Participants dataset (assuming all required fields are entered, and optional fields are of the correct data type as indicated in the above table). The user will then be automatically redirected to the Specimen Entry form in the Specimens tab (see below).
  2. The Cancel button will clear the form and return the user to the Overview tab.


Entering Participants


Participants can be entered individually or in bulk. The bulk option should only be used by external collaborators who have existing biosample-related data collected and stored elsewhere that are being shared with CAMH scientists for current analysis.

The process for entering single participants is as follows:

  1. Enter a valid Participant ID (Recommended format: Neuroinformatics Study Participant ID - Ex: TST01_CMH_00001000).
  2. Indicate the Clinic (recruitment/collection location) from the dropdown menu.
    Enter Participant FieldsImage Added
  3. Fill the remaining fields as necessary (see table from previous section).
  4. Ensure that the entered information is correct and in the correct type (refer to the Data Type column in the table above), and press Submit. The window will redirect the user to the Specimen Entry
    1. Note that pressing the Cancel button will clear the form causing the window to redirect to the Overview tab.
      Confirmation boxImage Added

(warning)NoteEntering participants in bulk has been discontinued. If Participants need to be added in bulk, please contact the LabKey Administrator or Biobank staff.

Editing Participants

(warning)Note Editing participants by users has been discontinued. If edits need to be made, please contact the LabKey Administrator or Biobank with the following information:

  1. Study with data to be edited
  2. Participant ID/SP-ID of participant to be edited
  3. Nature of edit (change in ID, sex, trio type, etc.)

The Administrator or Biobank staff will then add a comment explaining the change request.

Deleting Participants

(warning)Note Deleting participants by users has been discontinued. If deletions need to be made, please contact the LabKey Administrator or Biobank staff.


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Participants Across Multiple Studies
Participants Across Multiple Studies
Participants Across Multiple Studies

In certain situations, participants consent to more than one study. In this case, the study team would enter a participant record for each study, noting the Participant ID of the other study to which the participant has consented in the Comments section. For example, the study team would create participant records in both studies ABC and XYZ using the participant’s study-specific participant ID.  The study team must also note in the Comments section of the participant record “Same as ABC01_CMH_00000001” in the XYZ record, and “Same as XYZ_CMH_00000001” in the ABC record.

(warning)Note that this procedure is similar for specimen entry as well. Please see "Samples Across Multiple Studies" for more details.